Pairwise Alignments

Query, 544 a.a., response regulator (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 418 a.a., Stalked cell differentiation-controlling protein from Alteromonas macleodii MIT1002

 Score =  127 bits (318), Expect = 1e-33
 Identities = 115/418 (27%), Positives = 191/418 (45%), Gaps = 20/418 (4%)

Query: 130 YCIAIIEDDNNVGAMITKQLHEFGFNVQHFLNFTDFIKVQYASPFDLI--LLDLILPDYT 187
           Y + ++ED   V  ++ K + +               K    S  D +  ++DL LPD  
Sbjct: 2   YKVLVVEDSLTVRKIVNKLIEDNPHFTCDLCEDLAEAKSALESDTDYLAAIVDLNLPDAP 61

Query: 188 EDALFEAACEFEKNNTRVFVLSSRSDFDMRLLAIRANVSEYFVKPAETTLL-VRKIHQWL 246
                E A  +   N    VL+   D   R   +   V +Y  K +  + L V K+   L
Sbjct: 62  NGESVELALSY---NVPTIVLTGNFDEFTRAQLLDQGVLDYITKESRYSYLQVSKLVDRL 118

Query: 247 KMSDKPPLKVLLVDDQQSMVDYFSSLLRSHGLMVRGMTKPEQVIPTLEQFEP-DLFIFDL 305
           + +     KVL+V+D ++  ++  SLLR     V       + +  L+      + I D 
Sbjct: 119 RKN--LTTKVLVVEDSRTSRNHICSLLRKFQFQVHEANDGLEALEELDNHRDIKMVIADH 176

Query: 306 YMPGVNGLELARMIRQLDKYTSSPILVLSSDDTMQNKVSIIQAGSDDLISKQTAPSLFVT 365
            MP ++G EL + IR   +      + LS++         I++G++D +SK      F  
Sbjct: 177 RMPNMDGYELVKAIRHEKRMQDLVFIGLSANGDSVLTSKFIKSGANDFLSKPFYHEEFYC 236

Query: 366 QVISRAQRGH---DIRSSASRDSLTGLLNHTQILVAARHCINLAKRANSSVCIAMLDLDH 422
           +++   +       IR+SA+ D LT + N   +   A       K +   V ++M+D D+
Sbjct: 237 RIMQNLESQEMIQTIRNSANLDPLTKVYNRRFLYERAEELF-ANKASRKDVIVSMIDADN 295

Query: 423 FKQVNDTYGHSGGDKVLLAFAHLLQQSLRAADFMGRYGGEEFMLVIPDMPAPLVIAKVNA 482
           FK VNDTYGH  GD +L  FA LL+      D + RYGGEEF  V+   P  + ++ ++A
Sbjct: 296 FKSVNDTYGHKTGDMLLQEFAALLKDYF-PDDLIVRYGGEEF-TVVSVRPPKVYLSALSA 353

Query: 483 IRESFSNIVFVEEGAEFKVTLSGGLAFSTECHEFQECLL-LADKNLYEAKRTGRNRII 539
             ++  + +F     +F +T S G+   TE H+  E  L +AD  LYEAK  G++++I
Sbjct: 354 FMDAVRSTIFTNH--KFNITCSIGVC--TEEHKCLESQLEVADARLYEAKHAGKDQVI 407