Pairwise Alignments

Query, 544 a.a., response regulator (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 579 a.a., GGDEF family protein from Agrobacterium fabrum C58

 Score = 99.8 bits (247), Expect = 3e-25
 Identities = 56/164 (34%), Positives = 91/164 (55%), Gaps = 4/164 (2%)

Query: 377 IRSSASRDSLTGLLNHTQILVAARHCINLAKRANSSVCIAMLDLDHFKQVNDTYGHSGGD 436
           +R+ +  D+LTG+ N   +  + R  ++       S+ + ++D+DHFK +ND YGH+ GD
Sbjct: 407 LRTLSETDALTGVFNRRALEKSVRAILS-GDEDYQSLGVMIIDIDHFKSINDRYGHAMGD 465

Query: 437 KVLLAFAHLLQQSLRAADFMGRYGGEEFMLVIPDMPAPLVIAKVNAIRESFSNIVFVEEG 496
             L   A LL+ +LR  D + RYGGEEF++V+ D+      A  + +R       F +E 
Sbjct: 466 LALQKTASLLKGALRKTDILARYGGEEFVVVLQDVSHATATATADRLRRLIEVQTF-DEQ 524

Query: 497 AEFKVTLSGGLAF--STECHEFQECLLLADKNLYEAKRTGRNRI 538
               +T S G+ +  +   + + E + +AD  LYEAKR GRNR+
Sbjct: 525 TGLSLTASFGVVWQEARAINSWDELIAIADDRLYEAKRAGRNRV 568