Pairwise Alignments

Query, 702 a.a., chemotaxis protein CheA (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 747 a.a., Chemotaxis histidine kinase CheA from Pseudomonas putida KT2440

 Score =  352 bits (904), Expect = e-101
 Identities = 251/754 (33%), Positives = 378/754 (50%), Gaps = 81/754 (10%)

Query: 7   EFHQVFFEESHEHLENMEQLLIAINLQSPDPEELNTIFRAAHSIKGGSGIFGFTALSSVT 66
           E  Q F  E+ E LE + + L+ +  +  D + LN IFR  H++KGG+G      L    
Sbjct: 8   EILQDFLVEAGEILEQLSEQLVELESRPDDADLLNAIFRGFHTVKGGAGFLQLNELVECC 67

Query: 67  HVMENLLDKVRKGTFELSSGIIDLLLKTVDTLSHILSLYREEEPIDWQQVEFAKNQLVAA 126
           H+ EN+ D +RKG   + + ++D++L+ +DT++ +    RE       +V  A   L+AA
Sbjct: 68  HIAENVFDVLRKGERRVDAELMDVVLEALDTVNSMFGQVRERA-----EVTPATPALLAA 122

Query: 127 LN--GDPFLTTSPEAIPATPTKTEITQTAVVVSDASHQD--DIGFGFFEDDVELTLAIEN 182
           L+   +P    +  A P      ++   A   ++  HQD  D  F    D ++   A   
Sbjct: 123 LSRLAEPGAAEAVAA-PVPAPVADVVAAAPAEAEEQHQDITDSEFEQLLDSLDAIKAQAA 181

Query: 183 QDFGFFDEAFTAKEISVEDINKTLLDSQL----------------VTNTEPDDDLGFGFF 226
            D     E  +     + D     L  QL                V++    D++    F
Sbjct: 182 ADEQMQGETVSGAGDEITDAEFESLLDQLHGKGQFNAEVAAPPVAVSSEVVSDEITDAEF 241

Query: 227 ESL-------------------------------TPESVDSEINALVHIQANKA-----I 250
           ESL                               + E  + E  AL+     K      +
Sbjct: 242 ESLLDQLHGKGTFQAGALPAAQAPAPAAPDNSAASDEISEHEFEALLDQLHGKGKFGGDV 301

Query: 251 AAIE-PLSKPVNSPSVPKIPRYTGNTAESTKVA-PADPVDPSPVLNKSVASGTKSTPTAA 308
           AA+E P +    +P+  K        AES  VA PA    PSP    + A      P  A
Sbjct: 302 AAVEAPAAVQAQAPAAAK--------AESQPVAKPAAAPAPSPASKPAAAP---RAPAPA 350

Query: 309 TKKGNTSTQDATLRVETSKIDTLVNLAGELVITQSMLTLIGNEISGELGERLKTALVELE 368
            +K   S  + T+RV+T+++D ++N+ GELV+ ++ L  +G   SG+  E +  A+  L+
Sbjct: 351 AEKHAASEAETTVRVDTARLDEIMNMVGELVLVRNRLVRLGLN-SGD--EAMSKAVSNLD 407

Query: 369 RNTREMQEAVMSVRMLPVSFVFNRFHRLVRDLSDQLGKNVNLVIEGGNTEIDKGMIEKLV 428
             T ++Q AVM  RM P+  VF RF RLVRDL+ QL K +NL + G  T++DK ++E L 
Sbjct: 408 VVTADLQTAVMKTRMQPIKKVFGRFPRLVRDLARQLKKEINLELVGEETDLDKNLVEALA 467

Query: 429 DPLTHLVRNSLDHGIEKPEVRRLLGKAEIAQLSLRASQRGGNIVIAVHDDGAGLHREKIL 488
           DPL HLVRN++DHGIE P+ R   GKA   ++ L A Q G +I++++ DDG G+    + 
Sbjct: 468 DPLVHLVRNAVDHGIEMPDEREASGKARTGRVVLSAEQEGDHILLSISDDGKGMDPNILR 527

Query: 489 QKARENNM---SVTDNMPDKQIWQLIFAAGFSTAKEITDVSGRGVGMDVVRRNIEALGGR 545
            KA E  +      + + +   + LIFA GFST  EI+DVSGRGVGMDVV+  I  L G 
Sbjct: 528 AKAVEKGLMDKDAAERLSESDCYNLIFAPGFSTKTEISDVSGRGVGMDVVKTKISQLNGS 587

Query: 546 IDIDSVAGQGATFEIQLPLTLAIVDGMSVSVGKQIYILPLVHIIESIQPHTEQLKYLAQE 605
           I+I S  GQG+   I++PLTLAI+  + V +G Q +  PLV++ E       +   +  +
Sbjct: 588 INIFSAKGQGSKIVIKVPLTLAIMPTLMVMLGNQAFAFPLVNVNEIFHLDLSRTNVVDGQ 647

Query: 606 RLIRVREEYLPLLNLHQLMEITPFAKCPEEGIVVLLESNNKRFGLCVDALVGQQQVVIKS 665
            ++ VR++ LPL  L + +      +   EG VV+L    +R G  VD LVGQ++VVIK 
Sbjct: 648 EVVIVRDKALPLFYLKRWLVQGQVHEEQHEGHVVILSVGTQRIGFVVDQLVGQEEVVIKP 707

Query: 666 LEKHYRRIPGVSGATIMGDGSVALILDVESLAQQ 699
           L K  +  PG+SGATI GDG +ALILDV S+ ++
Sbjct: 708 LGKMLQGTPGMSGATITGDGRIALILDVPSMLKR 741