Pairwise Alignments

Query, 702 a.a., chemotaxis protein CheA (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 657 a.a., chemotaxis protein CheA from Serratia liquefaciens MT49

 Score =  499 bits (1284), Expect = e-145
 Identities = 293/700 (41%), Positives = 418/700 (59%), Gaps = 61/700 (8%)

Query: 1   MSINMAEFHQVFFEESHEHLENMEQLLIAINLQSPDPEELNTIFRAAHSIKGGSGIFGFT 60
           MS++++ F+Q FF+E+ E L +MEQ L+ ++  +PD E LN IFRAAHSIKGG+  FGF+
Sbjct: 1   MSMDISAFYQTFFDEADELLADMEQHLLELDPLAPDIEPLNAIFRAAHSIKGGAATFGFS 60

Query: 61  ALSSVTHVMENLLDKVRKGTFELSSGIIDLLLKTVDTLSHILSLYREEEPIDWQQVEF-- 118
            L   TH++ENLLD  R+    LS+ II+L L+T D +   L  Y+  +  D    E+  
Sbjct: 61  VLQETTHLLENLLDGARRQEMSLSTEIINLFLETKDIMQEQLDAYKTSQKPDVDSFEYIC 120

Query: 119 -AKNQLVAALNGDPFLTTSPEAIPATPTKTEITQTAVVVSDASHQDDIGFGFFEDDVELT 177
            A  QL         L    +  PA P   +    A    +   +  +  G   ++V L 
Sbjct: 121 QALRQLA--------LDAQQQDAPAAPAVAQHAVAAPAAIEGGMRVCL-CGLKPNEVPLM 171

Query: 178 LAIENQDFGFFDEAFTAKEISVEDINKTLLDSQLVTNTEPDDDLGFGFFESLTPESVDSE 237
           L          +E     E+      +  L+  L+T+   DD                  
Sbjct: 172 L----------EELGNLGEVKNPHQTENSLEVTLLTSASEDD------------------ 203

Query: 238 INALVHIQANKAIAAIEPLSKPVNSPSVPKIPRYTGNTAESTKVAPADPVDPSPVLNKSV 297
           I+A++          +EP      +P   ++P           + P  PV  +PV  K  
Sbjct: 204 ISAVLCF-------VLEPEQISFTTPPQAELP--------PVAIEPVAPVAVAPVAAKP- 247

Query: 298 ASGTKSTPTAATKKGNTSTQDATLRVETSKIDTLVNLAGELVITQSMLTLIGNEISGELG 357
           A     TP    K    +++  ++RV   K+D L+NL GELVITQSML      +     
Sbjct: 248 APTVAETPKPRAK----ASESTSIRVAVEKVDQLINLVGELVITQSMLAQRSGNLDPVNH 303

Query: 358 ERLKTALVELERNTREMQEAVMSVRMLPVSFVFNRFHRLVRDLSDQLGKNVNLVIEGGNT 417
             L  ++ +LERN R++QE+VMS+RM+P+ +VF+RF RLVRDL+ +L K V L ++G +T
Sbjct: 304 GDLLNSMSQLERNARDLQESVMSIRMMPMEYVFSRFPRLVRDLAGKLNKQVELQLQGSST 363

Query: 418 EIDKGMIEKLVDPLTHLVRNSLDHGIEKPEVRRLLGKAEIAQLSLRASQRGGNIVIAVHD 477
           E+DK +IE+++DPLTHLVRNSLDHGIE P  R   GK+E+  L L A  +GGNI I V D
Sbjct: 364 ELDKSLIERIIDPLTHLVRNSLDHGIEDPATRLAAGKSEVGNLILSAEHQGGNICIEVTD 423

Query: 478 DGAGLHREKILQKARENNMSVTDNMPDKQIWQLIFAAGFSTAKEITDVSGRGVGMDVVRR 537
           DGAGL+REKIL KA    ++V+D+M D+ +  LIFA GFSTA+++TDVSGRGVGMDVV+R
Sbjct: 424 DGAGLNREKILAKAASQGLAVSDSMSDEDVGMLIFAPGFSTAEQVTDVSGRGVGMDVVKR 483

Query: 538 NIEALGGRIDIDSVAGQGATFEIQLPLTLAIVDGMSVSVGKQIYILPLVHIIESIQPHTE 597
           NI+ +GG ++I S AG+G +  I LPLTLAI+DGMSV V  +++ILPL  ++ES+QP  E
Sbjct: 484 NIQEMGGHVEIHSQAGKGTSIRILLPLTLAILDGMSVKVNNEVFILPLNAVMESLQPQAE 543

Query: 598 QLKYLA-QERLIRVREEYLPLLNLHQLMEITPFAKCPEEGIVVLLESNNKRFGLCVDALV 656
            L  LA  ER+++VR EYLPL+ L ++ ++        +GIVV+L+S  +R+ L VD L+
Sbjct: 544 DLHPLAGGERVLQVRGEYLPLVELFRVFDVAGAKTDATQGIVVILQSAGRRYALLVDQLI 603

Query: 657 GQQQVVIKSLEKHYRRIPGVSGATIMGDGSVALILDVESL 696
           GQ QVV+K+LE +YR++PG+S ATI+GDGSVALI+DV +L
Sbjct: 604 GQHQVVVKNLESNYRKVPGISAATILGDGSVALIVDVSAL 643