Pairwise Alignments

Query, 702 a.a., chemotaxis protein CheA (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 654 a.a., fused chemotactic sensory histidine kinase in two-component regulatory system with CheB and CheY: sensory histidine kinase/signal sensing protein (NCBI) from Escherichia coli BW25113

 Score =  495 bits (1275), Expect = e-144
 Identities = 288/704 (40%), Positives = 428/704 (60%), Gaps = 72/704 (10%)

Query: 1   MSINMAEFHQVFFEESHEHLENMEQLLIAINLQSPDPEELNTIFRAAHSIKGGSGIFGFT 60
           MS+++++F+Q FF+E+ E L +MEQ L+ +  ++PD E+LN IFRAAHSIKGG+G FGF+
Sbjct: 1   MSMDISDFYQTFFDEADELLADMEQHLLVLQPEAPDAEQLNAIFRAAHSIKGGAGTFGFS 60

Query: 61  ALSSVTHVMENLLDKVRKGTFELSSGIIDLLLKTVDTLSHILSLYREEEPIDWQQVEF-- 118
            L   TH+MENLLD+ R+G  +L++ II+L L+T D +   L  Y++ +  D    ++  
Sbjct: 61  VLQETTHLMENLLDEARRGEMQLNTDIINLFLETKDIMQEQLDAYKQSQEPDAASFDYIC 120

Query: 119 -AKNQLVAALNGDPFLTTSPEAIPATPTKTEITQTAVVVSDASHQDDIGFGFFEDDVELT 177
            A  QL     G+              T + +T+ + VV+ +  QD+             
Sbjct: 121 QALRQLALEAKGE--------------TPSAVTRLS-VVAKSEPQDE------------- 152

Query: 178 LAIENQDFGFFDEAFTAKEISVEDINKTLLDSQLVTNTEPDDDL-GFGFFESLTPESV-D 235
                Q             +   +++  LL+ +L   T   D + G     ++ P  + +
Sbjct: 153 -----QSRSQSPRRIILSRLKAGEVD--LLEEELGHLTTLTDVVKGADSLSAILPGDIAE 205

Query: 236 SEINALV--HIQANKAIAAIEPLSKPVNSPSVPKIPRYTGNTAESTKVAPADPVDPSPVL 293
            +I A++   I+A++       +S  +++P V K+         + + AP   V+     
Sbjct: 206 DDITAVLCFVIEADQITFETVEVSPKISTPPVLKL---------AAEQAPTGRVE----- 251

Query: 294 NKSVASGTKSTPTAATKKGNTSTQDATLRVETSKIDTLVNLAGELVITQSMLTLIGNEIS 353
                           +K   S +  ++RV   K+D L+NL GELVITQSML    +E+ 
Sbjct: 252 ---------------REKTTRSNESTSIRVAVEKVDQLINLVGELVITQSMLAQRSSELD 296

Query: 354 GELGERLKTALVELERNTREMQEAVMSVRMLPVSFVFNRFHRLVRDLSDQLGKNVNLVIE 413
                 L T++ +L+RN R++QE+VMS+RM+P+ +VF+R+ RLVRDL+ +LGK V L + 
Sbjct: 297 PVNHGDLITSMGQLQRNARDLQESVMSIRMMPMEYVFSRYPRLVRDLAGKLGKQVELTLV 356

Query: 414 GGNTEIDKGMIEKLVDPLTHLVRNSLDHGIEKPEVRRLLGKAEIAQLSLRASQRGGNIVI 473
           G +TE+DK +IE+++DPLTHLVRNSLDHGIE PE R   GK  +  L L A  +GGNI I
Sbjct: 357 GSSTELDKSLIERIIDPLTHLVRNSLDHGIELPEKRLAAGKNSVGNLILSAEHQGGNICI 416

Query: 474 AVHDDGAGLHREKILQKARENNMSVTDNMPDKQIWQLIFAAGFSTAKEITDVSGRGVGMD 533
            V DDGAGL+RE+IL KA    ++V++NM D ++  LIFA GFSTA+++TDVSGRGVGMD
Sbjct: 417 EVTDDGAGLNRERILAKAASQGLTVSENMSDDEVAMLIFAPGFSTAEQVTDVSGRGVGMD 476

Query: 534 VVRRNIEALGGRIDIDSVAGQGATFEIQLPLTLAIVDGMSVSVGKQIYILPLVHIIESIQ 593
           VV+RNI+ +GG ++I S  G G T  I LPLTLAI+DGMSV V  +++ILPL  ++ES+Q
Sbjct: 477 VVKRNIQKMGGHVEIQSKQGTGTTIRILLPLTLAILDGMSVRVADEVFILPLNAVMESLQ 536

Query: 594 PHTEQLKYLA-QERLIRVREEYLPLLNLHQLMEITPFAKCPEEGIVVLLESNNKRFGLCV 652
           P    L  LA  ER++ VR EYLP++ L ++  +        +GIVV+L+S  +R+ L V
Sbjct: 537 PREADLHPLAGGERVLEVRGEYLPIVELWKVFNVAGAKTEATQGIVVILQSGGRRYALLV 596

Query: 653 DALVGQQQVVIKSLEKHYRRIPGVSGATIMGDGSVALILDVESL 696
           D L+GQ QVV+K+LE +YR++PG+S ATI+GDGSVALI+DV +L
Sbjct: 597 DQLIGQHQVVVKNLESNYRKVPGISAATILGDGSVALIVDVSAL 640