Pairwise Alignments

Query, 702 a.a., chemotaxis protein CheA (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 749 a.a., chemotaxis protein CheA from Brevundimonas sp. GW460-12-10-14-LB2

 Score =  334 bits (856), Expect = 1e-95
 Identities = 197/477 (41%), Positives = 295/477 (61%), Gaps = 18/477 (3%)

Query: 228 SLTPESVDSEINALVHIQANKAIAAIEPLSKPVNSPSVPKIPRYTGNTAESTKVAPADPV 287
           ++ P S D +I AL+   A  A AA EP ++ V    +   P           +A A  V
Sbjct: 276 AVLPASDDLDIAALL---AKAAGAAAEPAAEVVPFAPLELEPA-------PAPIAAAPAV 325

Query: 288 DPSPVLNKSVASGTKSTPTAATKKGNTSTQDATLRVETSKIDTLVNLAGELVITQSMLTL 347
           +P+      VA+   +TP  A+     +    T+RV+  ++D L+N+ GELVI Q+ML+ 
Sbjct: 326 EPAAA---PVAAPVAATPAPASAP--VAPAPVTIRVDLDRVDRLINVVGELVIQQAMLSQ 380

Query: 348 IGNEISGELGERLKTALVELERNTREMQEAVMSVRMLPVSFVFNRFHRLVRDLSDQLGKN 407
              E        +   L +LE  TRE+Q++VM++R  PV  VF R  RLVR+++D + K 
Sbjct: 381 RVLESGLARSSGIALGLEDLELLTREIQDSVMAIRAQPVKSVFQRMPRLVREVADMVSKQ 440

Query: 408 VNLVIEGGNTEIDKGMIEKLVDPLTHLVRNSLDHGIEKPEVRRLLGKAEIAQLSLRASQR 467
           V LV  G +TE+DK ++E+L +P+TH++RN++DHG+E PE R   GK     + L A  R
Sbjct: 441 VRLVTAGEDTEVDKTVVERLAEPITHMLRNAIDHGLETPEERVAAGKPAEGAVRLAALHR 500

Query: 468 GGNIVIAVHDDGAGLHREKILQKARENNMSVTD-NMPDKQIWQLIFAAGFSTAKEITDVS 526
            G IVI + DDG G++RE++ + A +  +   D  + D+QI  LIFA GFSTA  ++D+S
Sbjct: 501 SGRIVIEISDDGRGINRERVKKIAVDKGLIAADAPLTDEQIDNLIFAPGFSTAAVVSDIS 560

Query: 527 GRGVGMDVVRRNIEALGGRIDIDSVAGQGATFEIQLPLTLAIVDGMSVSVGKQIYILPLV 586
           GRGVGMDVV+R+I+ALGGRI I SV G+G+TF + LPLTLA++DGM V+  +Q  I PL 
Sbjct: 561 GRGVGMDVVKRSIQALGGRISISSVPGKGSTFTLSLPLTLAVLDGMVVAAAEQTLIAPLP 620

Query: 587 HIIESIQPHTEQLKYL-AQERLIRVREEYLPLLNLHQLMEITPFAKCPEEGIVVLLES-N 644
            I+ES+ P    L ++   + +IR R+ +LPL+++  +M        P EG+ V++E+  
Sbjct: 621 AIVESLTPQAIDLHFVGGVDPVIRFRDRFLPLIDVALIMGFREQPMNPTEGVAVVVETEG 680

Query: 645 NKRFGLCVDALVGQQQVVIKSLEKHYRRIPGVSGATIMGDGSVALILDVESLAQQIK 701
            ++  L  DA+ GQ+QVVIKSLE +Y+++ GV+ ATI+GDG VALILDV+ L   ++
Sbjct: 681 GQQAALLFDAIQGQRQVVIKSLETNYQQVEGVAAATILGDGRVALILDVDVLVTDMR 737



 Score = 70.1 bits (170), Expect = 4e-16
 Identities = 39/102 (38%), Positives = 56/102 (54%), Gaps = 1/102 (0%)

Query: 12  FFEESHEHLENMEQLLIAINLQSPDPEELNTIFRAAHSIKGGSGIFGFTALSSVTHVMEN 71
           FF+E  E L ++E  L+ +     D E +N +FRA HS+KGG+G FG  AL    HV E 
Sbjct: 11  FFQECDELLADLEAKLMLLEQGQTDLETINAVFRAVHSVKGGAGAFGLEALVRFAHVFET 70

Query: 72  LLDKVRKGTFELSSGIIDLLLKTVDTLS-HILSLYREEEPID 112
           L+D++R G     +  I  LL+  D L+ HI +      P+D
Sbjct: 71  LMDELRAGRKPCDAITIKTLLRASDVLADHIQAAQGLIPPVD 112