Pairwise Alignments

Query, 400 a.a., ISSod4, transposase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 402 a.a., IS256 family transposase from Dickeya dianthicola 67-19

 Score =  362 bits (929), Expect = e-104
 Identities = 178/374 (47%), Positives = 249/374 (66%), Gaps = 6/374 (1%)

Query: 30  LIKQLTEAALQAELEQHLAHDPQP-----NRKNGKTPKTIKHPSGNFELDAPRDRNGTFE 84
           L K   E AL  EL +HL H+        N +NG + KT+    G  EL  PRDR  TFE
Sbjct: 30  LTKLTVETALNTELTEHLGHEKNAPKSGSNTRNGYSSKTVLCDDGEIELSTPRDRENTFE 89

Query: 85  PQLIKKNQTTLTDEIERKVLSMFSIGMSYRDINQHVEDMYGLNVSNATVSAITDKLIPEL 144
           PQLIKKNQT +T +++ ++LS+++ GM+ R+I    ++MY  +VS   +S +TD +  ++
Sbjct: 90  PQLIKKNQTRIT-QMDSQILSLYAKGMTTREIVSTFKEMYDADVSPTLISKVTDAVKEQV 148

Query: 145 KAWQQRPLDSHYPIVWLDAIHYKVKEDGRYVSKAVYTLLALNMKGKKEILGLHLSENEGA 204
             WQ RPL+  YPIV+LD I  KV+  G  ++KAV+  L +N  G+KE+LG+ L+ENEGA
Sbjct: 149 TEWQNRPLNPLYPIVYLDCIVVKVRHSGSVINKAVFLALGINTDGQKELLGMWLAENEGA 208

Query: 205 NYWLSVLTDLNNRGVKDILIACVDGLTGFPEAIASIFPHTETQLCVIHQIRNSMKYVASK 264
            +WL+VLT+L NRG++DILIACVDGL GFPEAI S++P T  QLC+IH +RNS+KYV+ K
Sbjct: 209 KFWLNVLTELKNRGLQDILIACVDGLKGFPEAINSVYPQTHIQLCIIHMVRNSLKYVSWK 268

Query: 265 NQKAFMADLKPVYRAVSKEAAEMALDELEAKWGDAYPLVINSWRRKWHNLSHYFKYPEHI 324
           + K   + LK VY+A ++EAA MALD+    W + YP +  SWR  W NL+ +F YP  I
Sbjct: 269 DYKGVTSGLKAVYQAPTEEAALMALDKFSGIWDEKYPQISKSWRAHWENLNTFFGYPPDI 328

Query: 325 RKVIYTTNAVEAVHRQFRKLTKTKGAFPNENSLLKLLYAGILNASDKWTMPIHNWSLCLS 384
           RK IYTTNA+E+++   R+  K +  FP ++S+ K++Y  I +AS KW+MPI NW L +S
Sbjct: 329 RKAIYTTNAIESLNSVIRQAIKKRKVFPTDDSVRKVIYLAIQSASKKWSMPIQNWRLAMS 388

Query: 385 QLAIYFEGRLDSVL 398
           +  I F  RL   L
Sbjct: 389 RFIIEFGDRLSDHL 402