Pairwise Alignments

Query, 269 a.a., ISSod1, transposase OrfB (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 284 a.a., IS3 family transposase ISAba21 from Acinetobacter radioresistens SK82

 Score =  179 bits (454), Expect = 6e-50
 Identities = 92/256 (35%), Positives = 149/256 (58%), Gaps = 1/256 (0%)

Query: 1   MSVSKSGYYDWHKRPANVISVETLKLYRLVRQLFKQSRGSLGNREMVKKLRKEGYQVGRY 60
           + VS S +YDW KR  N   V+  +   LV+   ++++ S G   + K L+ +G ++  Y
Sbjct: 17  LHVSVSRFYDWLKRGMNKRLVQRNQQTILVKIAHEETKQSYGYIRLTKHLQAQGIKISTY 76

Query: 61  LVRKIMHRLRLKATQRCAYKVTTQRKHSDAVADNLLNMNFNPVSANQVWAGDVTYLKTGE 120
            VR+I    +L   +   +K TT+  H+ A+  NLL   F+    N  W+ D+TY+ T E
Sbjct: 77  AVRQIKKLNQLYCKRHKRFKRTTKSDHNRAIYANLLEQQFSMTKPNLAWSSDITYIWTAE 136

Query: 121 GWMYLAVVMDLYSRRIVGWRIDKRMTTDLISKALIKAYNLRQPARGLVFHSDRGSQYTSK 180
           GW+YLA V DLY++++VG+ +++RMT  L+  AL  A   ++P +GL+ HSDRGSQY S 
Sbjct: 137 GWLYLAAVKDLYTKQVVGYSLNERMTAQLVCNALTMAIRNQKPTKGLIIHSDRGSQYCSH 196

Query: 181 QFGRLLSSYGIRASMGDVGACWDNAVVERFFGSLKHDWIFKVAQPTREFMKQDVTAYI-K 239
           ++ ++L     + SM   G C+DNA +E F+G LK++ +      TR+  K D+T YI  
Sbjct: 197 EYRKILEKCDFQGSMSKRGDCYDNAPIESFWGILKNELVHHCNYKTRDEAKADITEYIVL 256

Query: 240 YYNLERLHSANNDLSP 255
           +YN  R+  + +  +P
Sbjct: 257 FYNQRRIQKSLDFKTP 272