Pairwise Alignments

Query, 537 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 492 a.a., recombinase RmuC from Pseudomonas simiae WCS417

 Score =  344 bits (883), Expect = 4e-99
 Identities = 164/372 (44%), Positives = 264/372 (70%), Gaps = 1/372 (0%)

Query: 119 LSKSNAMQQTIQAKADAQQESLREKIATLESAEVRLQTQFENLANRIFEERSENFKHQNA 178
           L + +A+   ++A+   QQ+S ++++  L+ +   L+ QF  LA +IF+ER + F   + 
Sbjct: 114 LRRLDALSAALRAELREQQDSHQQRLTDLQGSRDELRAQFAELAGKIFDEREQRFAETSQ 173

Query: 179 NQLEGVLGPLKQQLEGFRQQIRESYNHEQSERSALKHQLEHLRDLNLKMSQDAINLTKAL 238
            +L  +L PLK++++ F +++ ESY +E  ER +L  +LE L+ LNL++S +A NLT+AL
Sbjct: 174 ERLGQLLDPLKERIQSFEKRVEESYQNEARERFSLAKELERLQQLNLRLSDEATNLTRAL 233

Query: 239 KGDNKQQGNWGEVILDRVLQESGLREGHEYHTQQDLKDDSGKRFKPDVIVHLPENKDVVI 298
           KG  K QGNWGE+IL+RVL+ +GL +G EY TQ  LK   G+RF+PDV++ LP +K VV+
Sbjct: 234 KGQ-KTQGNWGELILERVLEHAGLEKGREYQTQVSLKGPDGERFQPDVLIMLPGDKQVVV 292

Query: 299 DAKMSLISYERYFNSEDPLVREQAINEHVLSIRNHIKGLSQKDYQRLHGLKSLDYVLMFI 358
           D+K+SL +Y++Y  +ED ++ + A+ +HVLS+RNH+KGL+ KDY+RL GL SLD+VL+F+
Sbjct: 293 DSKVSLTAYQQYVAAEDDVIGQAALKQHVLSLRNHVKGLAGKDYKRLEGLHSLDFVLLFV 352

Query: 359 PIEPAFLLALEHDPSLVNFALEQNIMLVSPTNLLVALRTINNIWRYEYQNQHAQTIAKQA 418
           PIE AF  AL+ +P+L   A +++I++VSPT LL  LR I+++W+ E Q+Q+A+ IA++A
Sbjct: 353 PIEAAFSAALQAEPNLFQEAFDRHIVIVSPTTLLATLRVIDSLWKQERQSQNAREIAERA 412

Query: 419 GRIYDKLCGYLEDMEKLGRALDNAEKTYHSAMNKLSSGKGNLVRQAHLMQQLGVDTSKQL 478
           G +YDK   +++D++++G  L   +K Y +A NKL+ G+GNLV +   ++ LG   SK L
Sbjct: 413 GWLYDKFVLFIQDLDEVGNRLQQLDKAYSAARNKLTDGRGNLVSRTEQLRLLGARASKSL 472

Query: 479 DKMLLEKALNEA 490
              LLE+A+ ++
Sbjct: 473 PADLLERAMTDS 484