Pairwise Alignments

Query, 537 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 442 a.a., DNA recombination protein RmuC from Magnetospirillum magneticum AMB-1

 Score = 53.5 bits (127), Expect = 2e-11
 Identities = 83/396 (20%), Positives = 151/396 (38%), Gaps = 57/396 (14%)

Query: 88  LGKAEALAERVPSLEQQLSDSHRRQLELQLALSKSNAMQQTIQAKADAQQESLREKIATL 147
           L K + L+ER+  LE+ L D  R+       + ++   Q    A AD     LR  + T 
Sbjct: 23  LRKKDDLSERLDRLERVLRDEARQDRRETAEMIRT--FQGDSAASADKNHTELRILVET- 79

Query: 148 ESAEVRLQTQFENLA-----------------------NRIFEERSENFKHQNANQLEGV 184
           + AE R     +  A                        R+  E  E  + +N  +LE +
Sbjct: 80  KLAEFRSDQATQARALREEVLGGIKQLGEGIGKTVAEQTRVVSEHLEKLRGENTQKLEQM 139

Query: 185 LGPLKQQLEG-FRQQIRESYNHEQSERSALKHQLEHLRDLNLKMSQDAINLTKALKGDNK 243
              + ++L+G   +++ ES+         +   L  ++ L        +   K +  + K
Sbjct: 140 RQTVDEKLQGTLEKRLGESFKLVSDRLEQVHKGLGEMQSL-----ASGVGDLKRVLTNVK 194

Query: 244 QQGNWGEVILDRVLQESGLREGHEYHTQQDLKDDSGKRFKPDVIVHLPENKD------VV 297
            +G WGEV L  +L++  +    +Y  + + K  S +R   D  + LP   D      + 
Sbjct: 195 TRGTWGEVQLGALLEQ--IFRADQYMREANCKKGSLERV--DFAIRLPGKGDDEPEVLLP 250

Query: 298 IDAKMSLISYERY---FNSEDPLVREQAINEHVLSIRNHIKGLSQKDYQRLHGLKSLDYV 354
           ID+K     YER        DP   E A       +++  + +  K    ++   + D+ 
Sbjct: 251 IDSKFPNEDYERLQLAVERADPDAVEAAAKGLETRVKSFARDIRDK---YVNPPTTTDFA 307

Query: 355 LMFIPIEPAFLLALEHDPSLVN-FALEQNIMLVSPTNLLVALRTINNIWRYEYQNQHAQT 413
           ++F+P E  +   L   P LV+    +  ++   PT L   L  I   ++          
Sbjct: 308 ILFLPTEGLYAEVLRR-PGLVDLIQRDYKVIAAGPTTLGAILNAIQMGFK-------TMA 359

Query: 414 IAKQAGRIYDKLCGYLEDMEKLGRALDNAEKTYHSA 449
           I K++  +++ L     +  K G  LD  +K    A
Sbjct: 360 IEKRSSEVWEILGAVKTEFGKYGDVLDKVQKKLQEA 395



 Score = 29.6 bits (65), Expect = 2e-04
 Identities = 38/182 (20%), Positives = 76/182 (41%), Gaps = 13/182 (7%)

Query: 32  RLTRSRWQQFKDDLEQEMRQVNEDAELSLAQQQILVDDKDSQLRLCQQRLEQKIEHLGKA 91
           R+     ++ + +  Q++ Q+ +  +  L  Q  L        +L   RLEQ  + LG+ 
Sbjct: 119 RVVSEHLEKLRGENTQKLEQMRQTVDEKL--QGTLEKRLGESFKLVSDRLEQVHKGLGEM 176

Query: 92  EALAERVPSLEQQLSDSHRRQL--ELQL-ALSKSNAMQQTIQAKADAQQESLREKIATL- 147
           ++LA  V  L++ L++   R    E+QL AL +          +A+ ++ SL      + 
Sbjct: 177 QSLASGVGDLKRVLTNVKTRGTWGEVQLGALLEQIFRADQYMREANCKKGSLERVDFAIR 236

Query: 148 ------ESAEVRLQTQFENLANRIFEERSENFKHQNANQLEGVLGPLKQQLEGFRQQIRE 201
                 +  EV L        N  +E      +  + + +E     L+ +++ F + IR+
Sbjct: 237 LPGKGDDEPEVLLPID-SKFPNEDYERLQLAVERADPDAVEAAAKGLETRVKSFARDIRD 295

Query: 202 SY 203
            Y
Sbjct: 296 KY 297