Pairwise Alignments

Query, 319 a.a., site-specific recombinase, phage integrase family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 319 a.a., Tyrosine recombinase XerD from Xanthobacter sp. DMC5

 Score = 78.6 bits (192), Expect = 2e-19
 Identities = 63/198 (31%), Positives = 89/198 (44%), Gaps = 35/198 (17%)

Query: 122 RDRLIIELLYGSGLRVSECLRLRIQDIDIESASLTVRDGKGHKDRQTILSHRCAEKLTTY 181
           R   ++ELLY SGLR+SE + L          ++ V  GKG K+R   LS      +  Y
Sbjct: 154 RTAAVVELLYASGLRISELVSLPAAAARARGDAILVT-GKGRKERLVPLSDPARAAMAAY 212

Query: 182 IEKAIKIQQDDNQQGIGPSLPNALERKYPNAFRQHGWMFIFPSTSTCINPYTGTLCRHHL 241
           +         D ++  G      LE             ++FPS+       +G + R   
Sbjct: 213 L---------DARKAAG------LEAS----------RWLFPSSGE-----SGYVTRQQA 242

Query: 242 HQSVIRKALGNAVRNIQMNKRVTCHTFRHSFATHLLQAGRDIRSVQELLGHNDVSTTQIY 301
            + +   AL   +   +++     H  RH+FA+HLL  G D+R VQ LLGH DVSTTQIY
Sbjct: 243 ARDLKELALAAGLDPAKLSP----HVLRHAFASHLLAHGADLRVVQTLLGHADVSTTQIY 298

Query: 302 THVLGQHFAGTTSPLDTL 319
           THVL +        L  L
Sbjct: 299 THVLDERLKSMVRDLHPL 316