Pairwise Alignments

Query, 319 a.a., site-specific recombinase, phage integrase family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 331 a.a., site-specific tyrosine recombinase XerD from Agrobacterium fabrum C58

 Score =  108 bits (271), Expect = 1e-28
 Identities = 99/318 (31%), Positives = 153/318 (48%), Gaps = 45/318 (14%)

Query: 9   SGLQQEMRMRGYSIRTEKTYLYWIKAFINFHGKRHPETMG--TEEVAQFLTFLANQRNVA 66
           S L+     RG +  T  +Y + +     F G+R        T +++ +LT LA Q   A
Sbjct: 16  SFLEMMSAERGAAANTLSSYEHDLADLREFLGRRGQSLTEAQTPDLSAYLTHLAAQ-GFA 74

Query: 67  INTQKIALNALAYLYQKHLHHE--LGD--LGFCYATKQRY-LPTVLSPSEISLILN---- 117
             +Q   L+++   Y + L+ E   GD   G   A ++   LP  +S ++++ +L     
Sbjct: 75  ATSQARRLSSMRQFY-RFLYSEGLRGDDPTGIIDAPRKGLALPKTMSVADVNRLLGLAAQ 133

Query: 118 ----ELDG-----RDRLIIELLYGSGLRVSECLRLRIQDIDIESASLTVRDGKGHKDRQT 168
               E  G     R  L++ELLY +G+RVSE + L ++ +  E   L +R GKG+KDR  
Sbjct: 134 EAATEGPGQLARIRMHLLLELLYATGMRVSELVSLPVKVLRQEGRFLMIR-GKGNKDRMV 192

Query: 169 ILSHRCAEKLTTYIEKAIKIQQDDNQQGIGPSLPNALERKYPNAFRQHGWMFIFPSTSTC 228
           +LS    E +  Y      + Q+ ++        +  E  +           +FPS S  
Sbjct: 193 LLSRAAIEAMEKYEAGRKALSQEKSKAAASQKKTDTAESPW-----------LFPSNSK- 240

Query: 229 INPYTGTLCRHHLHQSVIRKALGN-AVRNIQMNKRVTCHTFRHSFATHLLQAGRDIRSVQ 287
                      HL + V  + L + A+R       V+ H  RH+FA+HLLQ G D+R+VQ
Sbjct: 241 ---------EGHLPRQVFARDLKDIAIRAGLTASAVSPHVLRHAFASHLLQNGADLRAVQ 291

Query: 288 ELLGHNDVSTTQIYTHVL 305
           ELLGH+D+STTQIYTHVL
Sbjct: 292 ELLGHSDISTTQIYTHVL 309