Pairwise Alignments

Query, 319 a.a., site-specific recombinase, phage integrase family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 306 a.a., Tyrosine recombinase XerD from Acinetobacter radioresistens SK82

 Score = 92.8 bits (229), Expect = 9e-24
 Identities = 71/211 (33%), Positives = 103/211 (48%), Gaps = 44/211 (20%)

Query: 101 RYLPTVLSPSEISLILNELDG------RDRLIIELLYGSGLRVSECLRLRIQDIDIESAS 154
           R LP  LS  ++  +L+  D       RDR ++E+LY  GLRV+E L LR++ I+++   
Sbjct: 117 RALPKDLSELDVEHLLHAPDINTALGLRDRAMLEVLYACGLRVTELLNLRLELINLKQGY 176

Query: 155 LTVRDGKGHKDRQTILSHRCAEKLTTYIEKAIKIQQDDNQQGIGPSLPNALERKYPNAF- 213
           L +  GKG+K+R   L     E +  Y+ +A                P   +      F 
Sbjct: 177 LRIT-GKGNKERLVPLGQVAIEWVEKYLNEA---------------RPQLYKSATDYLFL 220

Query: 214 RQHGWMFIFPSTSTCINPYTGTLCRHHLHQSVIRKALGNAVRNIQMNKRVTCHTFRHSFA 273
            QHG                G + R +   ++ R AL   ++       ++ HT RH+FA
Sbjct: 221 TQHG----------------GIMSRQNFWYAIKRYALQAGIQ-----AELSPHTLRHAFA 259

Query: 274 THLLQAGRDIRSVQELLGHNDVSTTQIYTHV 304
           THLL  G D+R VQ LLGH+D+STTQIYTHV
Sbjct: 260 THLLNHGADLRVVQMLLGHSDLSTTQIYTHV 290