Pairwise Alignments

Query, 315 a.a., NifR3/Smm1 family protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 330 a.a., tRNA-dihydrouridine(20/20a) synthase from Xanthobacter sp. DMC5

 Score = 87.4 bits (215), Expect = 4e-22
 Identities = 75/242 (30%), Positives = 111/242 (45%), Gaps = 28/242 (11%)

Query: 5   LAPMEGVVDDLMRDILSSINPYDLLVTEFVRVVDQLLPEKVFLKLCPELLSGGYTPSGTP 64
           +APM    D   R    + + + LL TE V     +  ++  L         G++ +  P
Sbjct: 11  VAPMMDWTDRHCRVFHRTFSRHALLYTEMVTAPAVIHGDRARLL--------GFSDAEHP 62

Query: 65  VRVQLLGQEPNCMAENAMRAIELGSHGVDANFGCPAKMVNRSNGGAVLLQYPNTIHDIVR 124
           V VQL G +P  +A+ A    + G   ++ N GCP+  V   N GA L++ P  + D V 
Sbjct: 63  VAVQLGGSDPALLAQAARICADFGYDEINLNVGCPSDRVQGGNFGACLMREPQVVADCVA 122

Query: 125 AMRQAVPAEHPVTAKIRLGYEDKSLFMENAL-----AVYEAGATELAIHARSK-VDGYK- 177
           AM+ AV    PVT K R+G +D+    E AL     AV  AG   L +HAR   ++G   
Sbjct: 123 AMKSAVAL--PVTVKCRIGVDDQD--PEEALDTLADAVLAAGCDGLIVHARKAWLNGLSP 178

Query: 178 ------PPAYWEYITEVRERLP-IPVIANGEIWNRDDAKRCMQVTGCDSIMIGRGAISLP 230
                 PP  ++ +  ++ RLP + V  NG +     A+   +  G D IM GR A   P
Sbjct: 179 RENRDIPPLDYDRVRRLKARLPHVRVALNGGL--ESLAQGLAEADGLDGIMFGRAAYHTP 236

Query: 231 NL 232
            L
Sbjct: 237 EL 238