Pairwise Alignments

Query, 315 a.a., NifR3/Smm1 family protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 337 a.a., tRNA-dihydrouridine synthase B from Pseudomonas simiae WCS417

 Score =  112 bits (279), Expect = 2e-29
 Identities = 76/229 (33%), Positives = 119/229 (51%), Gaps = 10/229 (4%)

Query: 3   VILAPMEGVVDDLMRDILSSINPYDLLVTEFVRVVDQLLPEKVFLKLCPELLSGGYTPSG 62
           +ILAPM GV D   R +   +    L+V+E V     L   +   K    ++  G     
Sbjct: 15  LILAPMAGVTDQPFRQLCKRLGA-GLVVSEMVTSDMSLWNTR---KSRMRMIHEG---DP 67

Query: 63  TPVRVQLLGQEPNCMAENAMRAIELGSHGVDANFGCPAKMVNRSNGGAVLLQYPNTIHDI 122
            P  VQ+ G +   +A+ A   +ELG+  +D N GCPAK V     G+ LL+    + +I
Sbjct: 68  EPRSVQIAGGDAQMLADAARANVELGAQIIDINMGCPAKKVCNKAAGSALLKDEQLVAEI 127

Query: 123 VRAMRQAVPAEHPVTAKIRLGYE-DKSLFMENALAVYEAGATELAIHARSKVDGYKPPAY 181
           ++A+  AV    PVT KIR G++ D    +  A    +AG T LA+H R++ D Y   A 
Sbjct: 128 LQAVVAAVDV--PVTLKIRTGWDRDNKNGLTVAKIAEQAGITALAVHGRTRADLYTGEAE 185

Query: 182 WEYITEVRERLPIPVIANGEIWNRDDAKRCMQVTGCDSIMIGRGAISLP 230
           ++ I  +++ + +PV ANG+I + + A+R +  TG D ++IGR A   P
Sbjct: 186 YDTIAAIKQAVSMPVFANGDIDSAEKARRVLHATGADGLLIGRAAQGRP 234