Pairwise Alignments

Query, 315 a.a., NifR3/Smm1 family protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 325 a.a., tRNA-dihydrouridine synthase C from Pseudomonas simiae WCS417

 Score =  291 bits (746), Expect = 1e-83
 Identities = 145/311 (46%), Positives = 205/311 (65%), Gaps = 5/311 (1%)

Query: 1   MRVILAPMEGVVDDLMRDILSSINPYDLLVTEFVRVVDQLLPEKVFLKLCPELLSGGYTP 60
           M++ LAPMEG+VD+++RD+L+ +   D  VTEF+RV D+LL    F KL PELL G +T 
Sbjct: 1   MQIALAPMEGLVDNILRDVLTRVGGIDWCVTEFIRVNDRLLTPAYFHKLAPELLHGAHTA 60

Query: 61  SGTPVRVQLLGQEPNCMAENAMRAIELGSHGVDANFGCPAKMVNRSNGGAVLLQYPNTIH 120
           +G P+RVQLLG +P C+AENA  A ELGS  +D NFGCPAK VN+S GGAVLL+ P  ++
Sbjct: 61  AGVPLRVQLLGSDPVCLAENAALACELGSQVIDLNFGCPAKTVNKSRGGAVLLKEPELLN 120

Query: 121 DIVRAMRQAVPAEHPVTAKIRLGYEDKSLFMENALAVYEAGATELAIHARSKVDGYKPPA 180
            IV  +R+AVPA  PVTAK+RLG++     +  A A+ E GA  + +HAR+K DGYKPPA
Sbjct: 121 QIVEHVRRAVPAHIPVTAKMRLGFDSPDGALVCATALAEGGAAHIVVHARTKTDGYKPPA 180

Query: 181 YWEYITEVRERLPIPVIANGEIWNRDDAKRCMQVTGCDSIMIGRGAISLPNLADTIKTG- 239
           +WE+I  V+E + +PV ANG+IW+ +D KRC +V+G + IM+GRG ++ P+LA  I    
Sbjct: 181 HWEWIPRVQEVVKVPVFANGDIWSVEDWKRCREVSGAEDIMLGRGLVARPDLARQIAAAR 240

Query: 240 ----ATPYSWADTLQLMLSYTQRELSGRKSDYYPARIKQWFSYLNRQYPEADTLFRELRI 295
                   +WA+   ++  +  + ++       P R+KQW + L R YPEA  LF  +R 
Sbjct: 241 AGEEVVEMTWAEMQPMLQEFWTQSVAQLTERQAPGRLKQWLAMLTRNYPEAVELFTLMRR 300

Query: 296 YKTTEEIVRVL 306
               E++ R+L
Sbjct: 301 ETDLEQVGRLL 311