Pairwise Alignments

Query, 315 a.a., NifR3/Smm1 family protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 353 a.a., tRNA-dihydrouridine synthase DusB from Variovorax sp. SCN45

 Score =  104 bits (259), Expect = 4e-27
 Identities = 81/262 (30%), Positives = 128/262 (48%), Gaps = 15/262 (5%)

Query: 2   RVILAPMEGVVDDLMRDILSSINPYDLLVTEFVRVVDQLLPEKVFLKLCPELLSGGYTPS 61
           R+ +APM GV D   R +  ++      V+E V    +L      LK        G    
Sbjct: 13  RLFVAPMAGVTDRPFRMLCRALGA-GYAVSEMVTSRKELWGT---LKTSRRANHDG---E 65

Query: 62  GTPVRVQLLGQEPNCMAENAMRAIELGSHGVDANFGCPAKMV-NRSNGGAVLLQYPNTIH 120
             P+ VQ+ G + + MAE  +  IE G+  +D N GCPAK V N+  G A++   P  + 
Sbjct: 66  PGPIAVQIAGTDADMMAEATVYNIERGAQIIDINMGCPAKKVCNKWAGSALMRDEPLALE 125

Query: 121 DIVRAMRQAVPAEHPVTAKIRLGYE-DKSLFMENALAVYEAGATELAIHARSKVDGYKPP 179
            +   +  A P   PVT K+R G+  D    ++ A     AG   L +H R++  GYK  
Sbjct: 126 IVQAVVDAARPFNVPVTLKMRTGWSHDHRNAVKLARDFESAGVQMLTVHGRTREQGYKGH 185

Query: 180 AYWEYITEVRERLPIPVIANGEIWNRDDAKRCMQVTGCDSIMIGRGAISLP----NLADT 235
           A ++ I  V+  + +PV+ANG+I + + A+  +  TG D++MIGR A   P     +A  
Sbjct: 186 AEYDTIAAVKAAVRVPVVANGDIRSPEKARDVLAATGADAVMIGRAAQGRPWIFREIAHF 245

Query: 236 IKTGA--TPYSWADTLQLMLSY 255
           ++TG    P   A+  +L+L +
Sbjct: 246 LETGTHRAPPLVAEVRRLLLDH 267