Pairwise Alignments

Query, 315 a.a., NifR3/Smm1 family protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 337 a.a., tRNA-dihydrouridine synthase B from Pseudomonas putida KT2440

 Score =  104 bits (259), Expect = 3e-27
 Identities = 73/229 (31%), Positives = 113/229 (49%), Gaps = 10/229 (4%)

Query: 3   VILAPMEGVVDDLMRDILSSINPYDLLVTEFVRVVDQLLPEKVFLKLCPELLSGGYTPSG 62
           +ILAPM GV D   R +   +    ++V+E V     L   +         L   +    
Sbjct: 15  LILAPMAGVTDQPFRTLCQRLGA-GMVVSEMVSSDMSLWNSR------KSSLRRIHEGDP 67

Query: 63  TPVRVQLLGQEPNCMAENAMRAIELGSHGVDANFGCPAKMVNRSNGGAVLLQYPNTIHDI 122
            P  VQ+ G +   MA  A   +E G+  +D N GCPAK V     G+ LL+    + +I
Sbjct: 68  EPRSVQIAGGDAQMMAAAAKANVEAGAQIIDINMGCPAKKVCNKAAGSALLRDEALVSEI 127

Query: 123 VRAMRQAVPAEHPVTAKIRLGYEDKSLFMENALAVYE-AGATELAIHARSKVDGYKPPAY 181
           + A+  AV    PVT KIR G++  +    N   + E AG   LA+H R++ D Y   A 
Sbjct: 128 LHAVVSAVDV--PVTLKIRTGWDRANKNGLNVAKIAEQAGIQALAVHGRTRADLYTGEAE 185

Query: 182 WEYITEVRERLPIPVIANGEIWNRDDAKRCMQVTGCDSIMIGRGAISLP 230
           ++ I  +++ + IPV ANG+I + + A+  ++ TG D ++IGR A   P
Sbjct: 186 YDTIGAIKQAVSIPVFANGDITSPEKARAVLETTGVDGLLIGRAAQGRP 234