Pairwise Alignments

Query, 315 a.a., NifR3/Smm1 family protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 336 a.a., tRNA-dihydrouridine synthase A from Pseudomonas putida KT2440

 Score = 75.5 bits (184), Expect = 2e-18
 Identities = 73/245 (29%), Positives = 108/245 (44%), Gaps = 28/245 (11%)

Query: 2   RVILAPMEGVVDDLMRDILSSINPYDLLVTEFVRVVDQLLPEKV--FLKLCPELLSGGYT 59
           R  +APM    D   R  L  ++   LL TE V     LL      FL+         + 
Sbjct: 19  RFSVAPMMDWTDRHCRFFLRLLSRQTLLYTEMV-TTGALLHNDAHRFLR---------HD 68

Query: 60  PSGTPVRVQLLGQEPNCMAENAMRAIELGSHGVDANFGCPAKMVNRSNGGAVLLQYPNTI 119
            S  P+ +QL G  P  +A  A  A E G   V+ N GCP+  V  +  GA L+ +P  +
Sbjct: 69  ASEHPLALQLGGSVPADLAACARLAEEAGYDEVNLNVGCPSDRVQNNMIGACLMAHPALV 128

Query: 120 HDIVRAMRQAVPAEHPVTAKIRLGYEDKSLFMENA---LAVYEAGATELAIHAR------ 170
            D V+AMR AV    PVT K R+G   +  + E +     V EAG     +HAR      
Sbjct: 129 ADCVKAMRDAVST--PVTVKHRIGINGRDSYAELSDFVGQVREAGCRSFTVHARIAILEG 186

Query: 171 --SKVDGYKPPAYWEYITEVRERLP-IPVIANGEIWNRDDAKRCMQVTGCDSIMIGRGAI 227
              K +   PP  ++   +++   P + ++ NG I   D+ +  ++    D +M+GR A 
Sbjct: 187 LSPKENREIPPLRYDIAAQLKRDFPDLEIVLNGGIKTLDECQAHLET--FDGVMLGREAY 244

Query: 228 SLPNL 232
             P L
Sbjct: 245 HNPYL 249