Pairwise Alignments

Query, 315 a.a., NifR3/Smm1 family protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 313 a.a., tRNA dihydrouridine(16) synthase DusC from Erwinia tracheiphila SCR3

 Score =  338 bits (867), Expect = 1e-97
 Identities = 173/310 (55%), Positives = 212/310 (68%), Gaps = 1/310 (0%)

Query: 1   MRVILAPMEGVVDDLMRDILSSINPYDLLVTEFVRVVDQLLPEKVFLKLCPELLSGGYTP 60
           MRV+LAPMEGV+D L+R++L+ +N YDL +TEF+RVVDQLLP K F +LCPEL     TP
Sbjct: 1   MRVLLAPMEGVLDSLVRELLTDVNDYDLCITEFLRVVDQLLPVKSFYRLCPELHHASRTP 60

Query: 61  SGTPVRVQLLGQEPNCMAENAMRAIELGSHGVDANFGCPAKMVNRSNGGAVLLQYPNTIH 120
           SGT VR+QLLGQ P  +AENA RA+ LGS GVD N GCP+K VN S GGA LL+ P  I 
Sbjct: 61  SGTLVRIQLLGQHPAFLAENAARAVALGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIF 120

Query: 121 DIVRAMRQAVPAEHPVTAKIRLGYEDKSLFMENALAVYEAGATELAIHARSKVDGYKPPA 180
               AMR AVP   PVT K+RLG+E      E A AV +AGATEL +H R+K DGYK   
Sbjct: 121 RAASAMRVAVPPHLPVTVKVRLGWESGDWQFEIADAVAQAGATELVVHGRTKEDGYKAER 180

Query: 181 Y-WEYITEVRERLPIPVIANGEIWNRDDAKRCMQVTGCDSIMIGRGAISLPNLADTIKTG 239
             W  I E+R RL IPVIANGEIW+R  A+ CMQ+TGCD++MIGRGA+ +PNL+  IK  
Sbjct: 181 INWAAIGEIRRRLNIPVIANGEIWDRQSAEACMQMTGCDAVMIGRGALCIPNLSHMIKNN 240

Query: 240 ATPYSWADTLQLMLSYTQRELSGRKSDYYPARIKQWFSYLNRQYPEADTLFRELRIYKTT 299
           A P  WA+ L+L+  Y   E  G    Y+ ARIKQW  YL + Y EAD LF  +R  KT+
Sbjct: 241 APPMPWAEVLKLLHRYINLEKQGDTGFYHVARIKQWLGYLRKNYSEADCLFGHIRAMKTS 300

Query: 300 EEIVRVLEQA 309
            +I   +EQ+
Sbjct: 301 SDIAAFIEQS 310