Pairwise Alignments

Query, 315 a.a., NifR3/Smm1 family protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 313 a.a., tRNA-dihydrouridine(16) synthase from Acinetobacter radioresistens SK82

 Score =  293 bits (749), Expect = 5e-84
 Identities = 140/306 (45%), Positives = 204/306 (66%), Gaps = 8/306 (2%)

Query: 1   MRVILAPMEGVVDDLMRDILSSINPYDLLVTEFVRVVDQLLPEKVFLKLCPELLSGGYTP 60
           M+++LAPMEG+ D +MRD+L+ +  +D  VTEF+RV D +LP+ ++   CPEL + G T 
Sbjct: 1   MKLVLAPMEGLTDPIMRDVLTHVGSFDWCVTEFIRVTDSVLPDHIYYSYCPELKTEGKTA 60

Query: 61  SGTPVRVQLLGQEPNCMAENAMRAIELGSHGVDANFGCPAKMVNRSNGGAVLLQYPNTIH 120
           +GTPV VQ LG  P  +A NA+RA  LG+  +D NFGCPAK VNR  GG+VLL  P  ++
Sbjct: 61  AGTPVHVQFLGNNPEMLAANAVRAAILGAPAIDMNFGCPAKTVNRHRGGSVLLDEPEVVY 120

Query: 121 DIVRAMRQAVPAEHPVTAKIRLGYEDKSLFMENALAVYEAGATELAIHARSKVDGYKPPA 180
           ++V+A+R AVPA  PV+AK+RLGY D++  ++NA A+ +AGA+ + +HAR+K DGY PPA
Sbjct: 121 ELVKAVRDAVPAHIPVSAKMRLGYMDRNFMLDNAHAIEDAGASWVTVHARTKADGYTPPA 180

Query: 181 YWEYITEVRERLPIPVIANGEIWNRDDAKRCMQVTGCDSIMIGRGAISLPNLADTIKTGA 240
           +W+ +  +RE L I VIANGEIWN  DA++C   +GC+ +MIGRGA++ P+L   I+  +
Sbjct: 181 FWDQLQPIREALKINVIANGEIWNNTDARQCQLESGCEDLMIGRGAVTTPDLTQCIRNNS 240

Query: 241 TP--YSWADTLQLMLSYTQRELSG--RKSDYYPARIKQWFSYLNRQYPEADTLFRELRIY 296
                 W D L L     +R ++G  +       R KQW   +++ YPEA  L+ E++  
Sbjct: 241 DEPLLCWQDLLDLQ----RRFINGPSKTEIGMVGRYKQWLGMMSKHYPEAKMLWNEIKRL 296

Query: 297 KTTEEI 302
           K  +EI
Sbjct: 297 KKIDEI 302