Pairwise Alignments

Query, 222 a.a., RNA polymerase sigma-70 factor, ECF subfamily (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 204 a.a., RNA polymerase sigma factor RpoE from Rhodanobacter sp000427505 FW510-R12

 Score = 48.5 bits (114), Expect = 9e-11
 Identities = 46/203 (22%), Positives = 83/203 (40%), Gaps = 13/203 (6%)

Query: 32  LTADEHITDIDPLVSAIIKVANQRDKAAFGYLFSHFMPKIRAFGLQRLNQQGLAMDLVQE 91
           +T D   T  + L  A+++   Q D+ AF  L   +  K+     + +       D+ QE
Sbjct: 1   MTTDTARTGENELDRALVERVQQGDRRAFDLLVRKYQHKVIGLVSRYVRTHAECEDIAQE 60

Query: 92  TMTTVWTKSHLYNADKGSVATWVFTIM----RNQCFDMLRRVQHNREDA----FGDDIWP 143
           +    W     +  D  +  TW++ I     +N    M RR      DA    F      
Sbjct: 61  SFIRAWRAIGSFRGDS-AFYTWLYKIAVNTAKNHLVAMGRRPPSGDIDADEAEFMAGAER 119

Query: 144 LYDVAVNQDNNPDHKLTAKLLAHLDALPLAQRQVVQGIYMQELTQQELADALKVPIGTIK 203
           ++D A  +      ++   + + + +LP   R  +    +  L+  E+A+A+  PIGT++
Sbjct: 120 MHDSATPERELMRQEIEQSVFSTVQSLPEELRTAITLREVDGLSYDEIAEAMGCPIGTVR 179

Query: 204 SRLRLGL----EKLKSFLETQHD 222
           SR+        EKL+  L  + D
Sbjct: 180 SRIFRAREAIDEKLRPLLSDRED 202