Pairwise Alignments

Query, 1091 a.a., AcrB/AcrD/AcrF family protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1051 a.a., Cation/multidrug efflux pump from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  469 bits (1207), Expect = e-136
 Identities = 313/1083 (28%), Positives = 549/1083 (50%), Gaps = 80/1083 (7%)

Query: 1    MSIISTSVKRPVTVWMFMLAIMLFGMVGFSRLAVKLLPDLSYPTLTIRTMYDGAAPVEVE 60
            M I   S+KR   V +    + L G+  +++++ +LLP  S   +T+ T+Y GAAP EVE
Sbjct: 1    MQITKISIKRSTIVVVLFTILTLLGIFSYTQMSYELLPKFSPNVVTVSTVYPGAAPSEVE 60

Query: 61   QLVSKPIEEAVGVVKGLRKISSISRSGMSDVVLEFEWGTTMDMASLDVREKLDTIA--LP 118
              V++ +E+A+  ++G+  + S S    S + +E +    +D+   D +  +D +   LP
Sbjct: 61   NSVTRKLEDALASLEGIDVMKSTSLESFSIITIELDDDVDVDLILQDAQRDIDAVLGDLP 120

Query: 119  LDVKKPLLLRFNPNLDPIMRLALSVPNASEAELKQMRTYAEEELKRRLEALSGVAAVRLS 178
             DV  P L +F+ +  PIM++  +  N +  +   +    ++ ++  +  + GVA V L 
Sbjct: 121  EDVDPPSLGKFSLDDMPIMQMG-AYSNLTATDFYDLM---DQRIQPMISQIDGVAQVNLL 176

Query: 179  GGLEQEVHIQLNQEKLSQLNLNADDIKRRINEENINLSAGKVIQGDREYLVRTLNQFNSL 238
            GG E+E+ + L+Q KL+   ++   + + I + N++   GK+     + L+R   +F  +
Sbjct: 177  GGAEREIKVNLDQNKLNTYGISPLQVNQAIAQANLDFPTGKLKSDKEQILIRLAGKFTQV 236

Query: 239  DELGQVIVYRDAQTLVRLFEVATITDAYKERSDITRIGSQESIELAIYKEGDANTVAVAK 298
            DE+G++IV     + +++ +VA + D+ K+   ++R+    +I ++I K+ DAN V VA+
Sbjct: 237  DEIGELIVSYADGSPIKIKDVAEVVDSNKDEEILSRLNGNSAIGISIQKQSDANAVDVAE 296

Query: 299  KLRDELVKINKDPQQNKL--EVIYDQSEFIESAVSEVTSSALMGSVLAMLVIYLFLRNII 356
            ++   L ++      + L  E+  D SEF   A + V    ++  VL  +++ LFL +  
Sbjct: 297  RVNKALAQLETTYAGDDLRFEISQDSSEFTLEAANAVIHDLIIAVVLVAVIMLLFLHSFR 356

Query: 357  PTLIISISIPFSVIATFNMMYFADISLNIMSLGGIALAIGLLVDNAIVVLENIDRCRSEG 416
              +I+ I++P S+IATF +MY A  +LN+MSL  ++L +G+LVD+AIVV+ENI R   +G
Sbjct: 357  NAVIVMIAVPMSIIATFTVMYLAGFTLNLMSLLALSLVVGILVDDAIVVIENIYRHMEKG 416

Query: 417  MSKLDAAVTGTKEVAGAIFASTMTTLAVFVPLVFVDGIAGALFSDQALTVTFALLASLLV 476
             S + A+  G +E+ G + + T+  + VFVPL    G+   + +  ++TV  A + SLLV
Sbjct: 417  KSAIQASYDGIREIGGTVTSITLVIVVVFVPLSMTGGLISGILTQFSITVAVATMMSLLV 476

Query: 477  ALTSIPMLASREGFKILPELMKKTPKEKPTTKLGKLKHYSATVFSFPIVLLFNYLPSALL 536
            A T IP+L SR                       KL+H         IV  F     A  
Sbjct: 477  AFTLIPLLTSR---------------------FSKLEHLDPKSIFGKIVNGFEGFLDA-- 513

Query: 537  TFVLIIGRFFSWLLGLIMRPLSSGFNFVYHSTESIYHKLLAIALRKQLATLLLTTGITGA 596
                    F +WL G+    L   FN          HK++ +     +AT +L   ++  
Sbjct: 514  --------FVAWLTGI----LKWSFN----------HKIITL-----VATFVLF--VSSF 544

Query: 597  CISLLPRLGMELIPPMNQGEFYVEILLPPGTAVGETDRILQQLALSIKDRPEVKHAYSQA 656
             +     +G E +   ++GEF + + LP    + ET+   ++    +   P V   ++  
Sbjct: 545  MLVGYGFIGSEFVSQGDKGEFIMRLELPKSATLEETNFTTREAENFLTKNPMVTSVFTTV 604

Query: 657  GSGGLMTSDTARGGENW---GRLQVELVDHSAYHQVTQVLRDTARRIP-ALEAKIEQPEL 712
            G     T+ +  G ++      + V++VD    +       + AR +  ALE  I   E 
Sbjct: 605  GQ----TTGSMSGSQSTPYASEITVKMVDGKKRNLTAP---EFAREMEIALEENIVGAEF 657

Query: 713  FSFK---------TPLEIELTGYDLALLKRSADSLVNALSASDRFADINTSLRDGQPELS 763
             +            P++I L+G DL  LK  +  ++  +          TSL DG PE+ 
Sbjct: 658  TAVPIGITGTANDAPIQIVLSGPDLDTLKSFSQRVLAEVEKVPGTRKAQTSLEDGNPEIR 717

Query: 764  IRFDHARLAALGMDAPTVANRIAQRVGGTVASQYTVRDRKIDILVRSQLDERDQISDIDT 823
            +  D A+++ LG+D   V   +     G   ++Y   D + DI +R    +R  ++DI+ 
Sbjct: 718  VEVDRAKMSDLGLDMAMVGGTMQVAFNGNTDTKYRDGDYEYDINIRMDEFDRKSVADIEN 777

Query: 824  LIINPDSSQPIALSAVAEVSLQLGPSAINRISQQRVALVSANLAYGDLSDAVADAQQILA 883
            L       Q + L   A+     GPS +NR  +     V + ++         + Q+ +A
Sbjct: 778  LAFVNTKGQTVLLKQFAKAIPSEGPSELNRQDRITSVTVQSQVSGRPSGTVGTEIQERIA 837

Query: 884  AQVLPTSVQARFGGQNEEMEHSFQSLKIALILAVFLVYLVMASQFESLLHPLLILVAVPM 943
               LP  V   + G  +  E  F SL +AL+ ++ L+YL+M + +++ + PL+++ ++P+
Sbjct: 838  KLDLPKEVTVAYEGDMKMQEEGFGSLGVALLASILLIYLIMVALYDNYVFPLVVMFSLPL 897

Query: 944  ALAGSVLGLYITQTHLSVVVFIGLIMLAGIVVNNAIVLVDRINQLRSEGVEKLEAIRVAA 1003
            A+ G++L L ++ + LS+   +GLIML G+V  NAI+LVD  NQL++ G+E   A+  A 
Sbjct: 898  AVIGALLALAMSGSALSIFSILGLIMLMGLVAKNAILLVDFTNQLKAAGLEVKAALVKAV 957

Query: 1004 KSRLRPIMMTTLTTVLGLLPMALGLGDGAEVRAPMAITVIFGLSLSTLLTLIVIPVLYAM 1063
            + R RPI+MTTL  V G+LP+AL  G GAE +  +A  +I GL  S  LT++V+PV+Y +
Sbjct: 958  EIRFRPILMTTLAMVFGMLPIALASGAGAEWKNGLAWALIGGLISSMFLTMVVVPVIYYI 1017

Query: 1064 FDR 1066
            FDR
Sbjct: 1018 FDR 1020