Pairwise Alignments

Query, 1091 a.a., AcrB/AcrD/AcrF family protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1020 a.a., Cation/multidrug efflux pump from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  456 bits (1172), Expect = e-132
 Identities = 307/1075 (28%), Positives = 551/1075 (51%), Gaps = 79/1075 (7%)

Query: 5    STSVKRPVTVWMFMLAIMLFGMVGFSRLAVKLLPDLSYPTLTIRTMYDGAAPVEVEQLVS 64
            + S++RPV   +F L I+LFG++G + L V+  P +  P + +RT Y GA    +E  ++
Sbjct: 6    TVSIRRPVLAIVFSLTILLFGIIGMTFLGVREYPSVDPPIINVRTTYVGANADVIEAQIT 65

Query: 65   KPIEEAVGVVKGLRKISSISRSGMSDVVLEFEWGTTMDMASLDVREKLDTIA--LPLDVK 122
            +P+EE++  + G++ ++S S  G S++ +EF+ G  M+ A+ DVR+K+      LP D +
Sbjct: 66   EPLEESINGISGIKSLTSTSNDGTSNITVEFDVGADMEAAANDVRDKVSRAQRNLPPDAE 125

Query: 123  KPLLLRFNPNLDPIMRLALSVPNASEAELKQMRTYAEEELKRRLEALSGVAAVRLSGGLE 182
             P++ + + + +PI+ L +    + +  L Q+   A+   K RL+ + GV+ VR+ G  E
Sbjct: 126  PPVVSKADADSEPIVFLNVK---SEQKSLLQLSDIADNIFKERLQTIPGVSEVRIWGEKE 182

Query: 183  QEVHIQLNQEKLSQLNLNADDIKRRINEENINLSAGKVIQGDREYLVRTLNQFNSLDELG 242
              + ++++  +++   +   D+  ++  EN+ L +G++     E  VRT ++ ++ DE  
Sbjct: 183  YAMRLRMDPIRMASYGVTPLDVLTKVQSENVELPSGRIEGSTIELSVRTKSRLSTPDEFN 242

Query: 243  QVIVYRDAQTLVRLFEVATITDAYKERSDITRIGSQESIELAIYKEGDANTVAVAKKLRD 302
             +I+      +VR  +V     A      + +      + + +     +N++ +  +   
Sbjct: 243  NLIIKESENNIVRFQDVGNAELAPLNERTVLKRDGVPMVGVVLVPLPGSNSIDIVDEFYR 302

Query: 303  ELVKINKD-PQQNKLEVIYDQSEFIESAVSEVTSSALMGSVLAMLVIYLFLRNIIPTLII 361
             L  I KD P+  +L + +D +E+I +++SEV  + L+  +L + +I+LFLR+   T I 
Sbjct: 303  RLEFIKKDLPEDIELGIGFDSTEYIRNSISEVQETILLAFLLVVAIIFLFLRDWRTTFIP 362

Query: 362  SISIPFSVIATFNMMYFADISLNIMSLGGIALAIGLLVDNAIVVLENIDRCRSEGMSKLD 421
             I+IP S++  F +MY  D S+N+++L GI L+IGL+VD+AIVVLENI     +G     
Sbjct: 363  VITIPISLVGVFFIMYTMDFSINVLTLLGIVLSIGLVVDDAIVVLENIYSKIEKGEQPEA 422

Query: 422  AAVTGTKEVAGAIFASTMTTLAVFVPLVFVDGIAGALFSDQALTVTFALLASLLVALTSI 481
            AA  G +E+  A+ A+T+   AVF+P++F+ G  G LF +  + V  +++ S  VALT  
Sbjct: 423  AAEKGAEEIFFAVIATTIALAAVFLPVIFLTGTTGRLFREFGVVVAGSVIISSFVALTMT 482

Query: 482  PMLASREGFKILPELMKKTPKEKPTTKLGKLKHYSATVFSFPIVLLFNYLPSALLTFVLI 541
            PML+S+        L+KK  K            Y+ T   F  + L     +AL+ F+  
Sbjct: 483  PMLSSK--------LLKKREKHN--------WFYNVTEPGF--LWLNKKYEAALVWFMQ- 523

Query: 542  IGRFFSWLLGLIMRPLSSGFNFVYHSTESIYHKLLAIALRKQLATLLLTTGITGACISLL 601
                F W+  +I+  +  G   ++++  S                               
Sbjct: 524  ----FRWVSFIIILAMGGGIYLLFNTIPS------------------------------- 548

Query: 602  PRLGMELIPPMNQGEFYVEILLPPGTAVGETDRILQQLALSIKDR--PEVKHAYSQAGSG 659
                 EL P  ++GE  + +  P G      DR++ +L   +      +V  ++    S 
Sbjct: 549  -----ELAPTEDRGEMRINMSGPEGATFEYMDRVIDELLYEMMTTIPSDVWDSFISVTSP 603

Query: 660  GLMTSDTARGGENWGRLQVELVDHS----AYHQVTQVLRDTARRIPALEAKIEQPELFSF 715
            G  T+ T     N G ++V LVD S    +   V + + +  R+   ++A   QP+    
Sbjct: 604  GFGTAST-----NSGFIRVRLVDASQRTVSQQAVFEDVAEILRKKTDVKAFASQPQSIGD 658

Query: 716  K---TPLEIELTGYDLALLKRSADSLVNALSASDRFADINTSLRDGQPELSIRFDHARLA 772
            +    P++  L   +L  LK    + ++ ++ S  F   + +L+  +PE+ +  D  +  
Sbjct: 659  RRGGMPIQYVLQAQNLEKLKEVIPAFMDEVTQSPIFQFSDINLKFTKPEIEVEIDREKAR 718

Query: 773  ALGMDAPTVANRIAQRVGGTVASQYTVRDRKIDILVRSQLDERDQISDIDTLIINPDSSQ 832
             +G+    +A  +     G     + +  ++  ++   Q ++R++  ++  L +  ++ Q
Sbjct: 719  NIGVSVQEIARTLQLSYSGQRFDYFIMNGKQYQVVGEMQKEDRNEPINLRMLYVRAENGQ 778

Query: 833  PIALSAVAEVSLQLGPSAINRISQQRVALVSANLAYGDLSDAVADAQQILAAQVLPTSVQ 892
             + L  +  ++ +  P  + R ++   A VSA LA         D    +AA+VL  S  
Sbjct: 779  LVQLDNLVNITEKSTPPQLYRFNRFVSATVSAGLAPKYTIGDGLDEMDRIAAEVLDESFT 838

Query: 893  ARFGGQNEEMEHSFQSLKIALILAVFLVYLVMASQFESLLHPLLILVAVPMALAGSVLGL 952
                G ++E   S  SL  A + A+ L+YLV+++QFES   PL I++ VP+AL G++L L
Sbjct: 839  TDVAGVSKEFRESSNSLIFAFLFALILIYLVLSAQFESFTDPLTIMITVPLALFGALLSL 898

Query: 953  YITQTHLSVVVFIGLIMLAGIVVNNAIVLVDRINQLRSEGVEKLEAIRVAAKSRLRPIMM 1012
            ++    L++   IG+IML G+V  N I++V+  NQ ++ G+E  EAI  AA +R RPI+M
Sbjct: 899  WLGGYTLNIFSQIGIIMLIGLVTKNGILIVEFANQRKAHGLEVDEAIIGAAVARFRPILM 958

Query: 1013 TTLTTVLGLLPMALGLGDGAEVRAPMAITVIFGLSLSTLLTLIVIPVLYAMFDRK 1067
            T+L+T+LG+LP+AL LG GAE R+PM + VI GL LST+LTL VIP +Y     K
Sbjct: 959  TSLSTILGILPIALALGAGAESRSPMGVAVIGGLVLSTILTLFVIPGVYTYLTSK 1013



 Score = 63.9 bits (154), Expect = 6e-14
 Identities = 60/323 (18%), Positives = 138/323 (42%), Gaps = 8/323 (2%)

Query: 762  LSIRFDHARLAALGMDAPTVANRIAQRVGGTVASQYTVRDRKIDILVRSQLDERDQISDI 821
            + +R D  R+A+ G+    V  ++        + +      ++ +  +S+L   D+ ++ 
Sbjct: 185  MRLRMDPIRMASYGVTPLDVLTKVQSENVELPSGRIEGSTIELSVRTKSRLSTPDEFNN- 243

Query: 822  DTLIINPDSSQPIALSAV--AEVSLQLGPSAINRISQQRVALVSANLAYGDLSDAVADAQ 879
              LII    +  +    V  AE++     + + R     V +V   L   +  D V +  
Sbjct: 244  --LIIKESENNIVRFQDVGNAELAPLNERTVLKRDGVPMVGVVLVPLPGSNSIDIVDEFY 301

Query: 880  QILA--AQVLPTSVQARFGGQNEE-MEHSFQSLKIALILAVFLVYLVMASQFESLLHPLL 936
            + L    + LP  ++   G  + E + +S   ++  ++LA  LV  ++           +
Sbjct: 302  RRLEFIKKDLPEDIELGIGFDSTEYIRNSISEVQETILLAFLLVVAIIFLFLRDWRTTFI 361

Query: 937  ILVAVPMALAGSVLGLYITQTHLSVVVFIGLIMLAGIVVNNAIVLVDRINQLRSEGVEKL 996
             ++ +P++L G    +Y     ++V+  +G+++  G+VV++AIV+++ I     +G +  
Sbjct: 362  PVITIPISLVGVFFIMYTMDFSINVLTLLGIVLSIGLVVDDAIVVLENIYSKIEKGEQPE 421

Query: 997  EAIRVAAKSRLRPIMMTTLTTVLGLLPMALGLGDGAEVRAPMAITVIFGLSLSTLLTLIV 1056
             A    A+     ++ TT+      LP+    G    +     + V   + +S+ + L +
Sbjct: 422  AAAEKGAEEIFFAVIATTIALAAVFLPVIFLTGTTGRLFREFGVVVAGSVIISSFVALTM 481

Query: 1057 IPVLYAMFDRKKFDHTNIVSTAE 1079
             P+L +   +K+  H    +  E
Sbjct: 482  TPMLSSKLLKKREKHNWFYNVTE 504