Pairwise Alignments

Query, 1091 a.a., AcrB/AcrD/AcrF family protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1067 a.a., efflux RND transporter permease subunit from Brevundimonas sp. GW460-12-10-14-LB2

 Score =  412 bits (1059), Expect = e-119
 Identities = 297/1083 (27%), Positives = 529/1083 (48%), Gaps = 63/1083 (5%)

Query: 2    SIISTSVKRPVTVWMFMLAIMLFGMVGFSRLAVKLLPDLSYPTLTIRTMYDGAAPVEVEQ 61
            +I S S++ P+ + +  + + + G + +  L     PD+  P + +  +  GAAP E+E 
Sbjct: 5    NISSWSIRNPIPIVLLFVVLTIAGTMSYFTLRTNNFPDVDLPVVAVTVVQAGAAPTEMET 64

Query: 62   LVSKPIEEAVGVVKGLRKISSISRSGMSDVVLEFEWGTTMDMASLDVREKLDTIA--LPL 119
             V++ +E+AV  +  ++ I+S+   G+S   +EF+ G  ++  + DVR  +  I   LP 
Sbjct: 65   QVTRLVEDAVAGLGSVKHITSVVNEGVSTTSIEFQLGVNLEKVTNDVRNAVSGIRQNLPA 124

Query: 120  DVKKPLLLRFNPNLDPIMRLALSVPNASEAELKQMRTYAEEELKRRLEALSGVAAVRLSG 179
            DV++P++ R      P     +  P  S  EL     + +  + +RL ++ GV+ +   G
Sbjct: 125  DVQEPIVQRIEFTAIPFANYVVRAPGMSPEELSW---FVDNTVAKRLLSVRGVSQISRDG 181

Query: 180  GLEQEVHIQLNQEKLSQLNLNADDIKRRINEENINLSAGKVIQGDREYLVRTLNQFNSLD 239
            G+ +E+ I+L+  +L+   + A  +  ++   NINL  G+      E  +RT+    S++
Sbjct: 182  GVSREIRIKLDPARLAASGVTAAQVSNQLRASNINLPGGRGEIAGEEQAIRTVGSAKSVE 241

Query: 240  ELGQVIVYRDAQTLVRLFEVATITDAYKERSDITRIGSQESIELAIYKEGDANTVAVAKK 299
            +L + ++   +++ VRL ++  ITD + E     R   QE +   + +   ++ V V  +
Sbjct: 242  QLRETLIPIGSRS-VRLGDLGQITDEWSEPRGRARFNGQEVVGFGVSRAIGSSEVDVYDR 300

Query: 300  LRDELVKINKDPQQNKLEVIYDQSEFIESAVSEVTSSALMGSVLAMLVIYLFLRNIIPTL 359
            ++ E+ K++++     +E + + +E + +       + ++G++LA+ V+++FLR+   TL
Sbjct: 301  VKAEIEKLDQERGDVAIEEVANTTEDVVNNFHASVETLVLGALLAIAVVFIFLRDWRATL 360

Query: 360  IISISIPFSVIATFNMMYFADISLNIMSLGGIALAIGLLVDNAIVVLENIDRCRSEGMSK 419
            I ++++P S+I TF +M   + SLN+++L  ++L IG+LVD+AIV +ENI R   +G + 
Sbjct: 361  IAAVAMPLSLIPTFWVMDLTNQSLNVVTLLALSLTIGILVDDAIVEIENIVRHIRDGKAP 420

Query: 420  LDAAVTGTKEVAGAIFASTMTTLAVFVPLVFVDGIAGALFSDQALTVTFALLASLLVALT 479
              AA+    E+  A+ A+T T +AVF P  F+ G+ G  F   A+    ++L SLLVA T
Sbjct: 421  YPAAIEAADEIGLAVMATTATLIAVFAPTGFMPGVVGQFFKSFAIATCVSVLFSLLVART 480

Query: 480  SIPMLASREGFKILPELMKKTPKEKPTTKLGKLKHYSATVFSFPIVLLFNYLPSALLTFV 539
              P++ +         L+K+           + K +    +  P +   N          
Sbjct: 481  LTPLMGA--------YLLKR----------DQGKEHKEPFWMGPYLKALN---------- 512

Query: 540  LIIGRFFSWLLGLIMRPLSSGFNFVYHSTESIYHKLLAIALRKQLATLLLTTGITGACIS 599
                    W LG   R   +     +H   S + + +A  +       +L  GI    +S
Sbjct: 513  --------WALGDDWRKRRAD----HHPRASWFRRKVADRMFDH-RLWVLGMGILFFFLS 559

Query: 600  LL--PRLGMELIPPMNQGEFYVEILLPPGTAVGETDRILQQLALSIKDRPEVKHAYSQAG 657
            +    +L  E IP  +     V + LPPG  + ETD  +Q++   +  RPEV   YS  G
Sbjct: 560  IFMATKLPGEFIPVEDISRSTVTVQLPPGATLAETDSAVQRINRELMKRPEVASVYSSVG 619

Query: 658  SGGLMTSDTARGGENWG-----RLQVELV---DHSAYHQ-VTQVLRDTARRIPALEAKIE 708
            S    TS    GG + G      L V LV   D     Q   + +    R+IP    +  
Sbjct: 620  SA--TTSFGPGGGGSAGEVRSANLTVNLVGRWDRKLNQQEFERDMGPVLRQIPGARIQFG 677

Query: 709  QPELFSFKTPLEIELTGYDLALLKRSADSLVNALSASDRFADINTSLRDGQPELSI--RF 766
                    + L I L G +  +L+ +A  +   + +    +++ +S    +PE+ +  R 
Sbjct: 678  ASGGGGGSSLLTIALVGDEANVLEPAAAKVEREMRSIPGLSNVVSSASLVRPEILVTPRA 737

Query: 767  DHARLAALG-MDAPTVANRIAQRVGGTVASQYTVRDRKIDILVRSQLDERDQISDIDTLI 825
            D A L  +   D   VA          +  ++ + DR++ I V      R  +  ++ L 
Sbjct: 738  DVAALQGVSTQDISQVARVATLGDADQLLPKFNLGDRQVPIRVMLTEQARSDLGVLENLQ 797

Query: 826  INPDSSQPIALSAVAEVSLQLGPSAINRISQQRVALVSANLAYGDLSDAVADAQQILAAQ 885
            +   S   + LSAVA+++   GP+ INR+ + RVA ++A L    LS        + A +
Sbjct: 798  VPTASGATVPLSAVADITFGAGPNQINRLDRLRVANITAELTGLTLSQGTQAVNALPAIK 857

Query: 886  VLPTSVQARFGGQNEEMEHSFQSLKIALILAVFLVYLVMASQFESLLHPLLILVAVPMAL 945
             LP  V  +  G  E  +        A++  + L+Y+V+   F+S  HP+ IL A+P++ 
Sbjct: 858  SLPQGVSQKPSGDAESFQELGMGFAFAIVTGILLMYVVLVLLFKSFFHPITILAALPVSF 917

Query: 946  AGSVLGLYITQTHLSVVVFIGLIMLAGIVVNNAIVLVDRINQLRSEGVEKLEAIRVAAKS 1005
             G+   L +T   LS+   IG+IML GI   N+I+LVD       +G+ + +A+  AA  
Sbjct: 918  GGAFFLLLVTGKSLSMPALIGIIMLTGIAAKNSILLVDYAIMAMEKGMGRHDALMDAAHK 977

Query: 1006 RLRPIMMTTLTTVLGLLPMALGLGDGAEVRAPMAITVIFGLSLSTLLTLIVIPVLYAMFD 1065
            R RPI+MTT+   LG+LP+A   G+G   R+PMAI VI GL  ST L+L+ +PV++++ D
Sbjct: 978  RARPIIMTTMAMGLGMLPIAAAFGEGTAFRSPMAIAVIGGLITSTALSLLFVPVVFSLID 1037

Query: 1066 RKK 1068
              K
Sbjct: 1038 GVK 1040