Pairwise Alignments

Query, 1091 a.a., AcrB/AcrD/AcrF family protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1010 a.a., RND transporter, HAE1 family from Bacteroides ovatus ATCC 8483

 Score =  424 bits (1090), Expect = e-122
 Identities = 282/1072 (26%), Positives = 526/1072 (49%), Gaps = 84/1072 (7%)

Query: 1    MSIISTSVKRPVTVWMFMLAIMLFGMVGFSRLAVKLLPDLSYPTLTIRTMYDGAAPVEVE 60
            M+I   S++RPV   +  + I+LFG +G++ L V+  P +  P +++   Y GA    +E
Sbjct: 1    MNISELSIRRPVLATVLTIIILLFGFIGYNYLGVREYPSVDNPIISVSCSYPGANADVIE 60

Query: 61   QLVSKPIEEAVGVVKGLRKISSISRSGMSDVVLEFEWGTTMDMASLDVREKLDTIA--LP 118
              +++P+E+ +  + G+R +SS+S+ G S + +EFE    ++ A+ DVR+K+      LP
Sbjct: 61   NQITEPLEQNINGIPGIRSLSSVSQQGQSRITVEFELSVDLETAANDVRDKVSRAQRYLP 120

Query: 119  LDVKKPLLLRFNPNLDPIMRLALSVPNASEAELKQMRTYAEEELKRRLEALSGVAAVRLS 178
             D   P + + + +  PI+ +AL     S  EL ++   A+  +K +L+ +S V++V + 
Sbjct: 121  RDCDPPTVSKADADAMPILMVALQSDKRSLLELSEI---ADLTVKEQLQTISDVSSVSIW 177

Query: 179  GGLEQEVHIQLNQEKLSQLNLNADDIKRRINEENINLSAGKVIQGDREYLVRTLNQFNSL 238
            G     + + L+  K++   +   D+K  ++ EN+ L +G +     E  +RTL   ++ 
Sbjct: 178  GEKRYSMRLWLDPVKMAGYGITPVDVKNAVDNENVELPSGSIEGNTTELTIRTLGLMHTA 237

Query: 239  DELGQVIVYRDAQTLVRLFEVATITDAYKERSDITRIGSQESIELAIYKEGDANTVAVAK 298
            DE   +IV  +   +VR  ++        +     ++     + + +  +  AN + +A 
Sbjct: 238  DEFNDLIVKEENNRIVRFSDIGRAELGPADIKSYMKMNGVPMVGVVVIPQPGANHIEIAD 297

Query: 299  KLRDELVKINKD-PQQNKLEVIYDQSEFIESAVSEVTSSALMGSVLAMLVIYLFLRNIIP 357
             +   + ++ KD P+       +D ++FI ++++EV S+     VL +++I+LFLR+   
Sbjct: 298  AVYQRMEQMKKDLPEDVHYNYGFDNTKFIRASINEVKSTVYEAFVLVIIIIFLFLRDWRV 357

Query: 358  TLIISISIPFSVIATFNMMYFADISLNIMSLGGIALAIGLLVDNAIVVLENIDRCRSEGM 417
            TL+  I IP S+I  F +MY A  S+N++S+  I L++GL+VD+AIV+ ENI     +GM
Sbjct: 358  TLVPCIVIPVSLIGAFFVMYLAGFSINVLSMLAIVLSVGLVVDDAIVMTENIYIRIEKGM 417

Query: 418  SKLDAAVTGTKEVAGAIFASTMTTLAVFVPLVFVDGIAGALFSDQALTVTFALLASLLVA 477
            +  +A + G KE+  A+ ++T+T +AVF P+VF+DG+ G LF + ++ ++ +++ S   A
Sbjct: 418  APKEAGIEGAKEIFFAVISTTITLVAVFFPIVFMDGMTGRLFREFSIVISGSVIISSFAA 477

Query: 478  LTSIPMLASREGFKILPELMKKTPKEKPTTKLGKLKHYSATVFSFPIVLLFNYLPSALLT 537
            LT  PMLA++        L+ K  K+                                  
Sbjct: 478  LTFTPMLATK--------LLIKREKQ---------------------------------- 495

Query: 538  FVLIIGRFFSWLLGLIMRPLSSGFNFVYHSTESIYHKLLAIALRKQLATLLLTTGITGAC 597
                     SW       P   G N        +Y + LA  L K+   L  T  IT   
Sbjct: 496  ---------SWFYAK-TEPFFEGMN-------RLYSRSLAAFLSKRWIALPFTF-ITICL 537

Query: 598  ISLL-PRLGMELIPPMNQGEFYVEILLPPGTA---VGETDRILQQLALSIKDRPEVKHAY 653
            I +L   +  E+ P  ++ +  +      G     + +    + QL  SI    E   A 
Sbjct: 538  IGILWNAVPAEMAPLEDRSQISINTRGAEGVTYEYIRDYTEDINQLVDSILPDAEAVTAR 597

Query: 654  SQAGSGGLMTSDTARGGENWGRLQVELVDHSAYHQVTQVLRDTARRIPALEAKIEQPELF 713
              +GSG +  +       N+ ++            V + +    ++     + ++Q   F
Sbjct: 598  VSSGSGNVRITLKDMNERNYTQM-----------DVAEKISKAVQKKTMARSFVQQQSSF 646

Query: 714  SFK---TPLEIELTGYDLALLKRSADSLVNALSASDRFADINTSLRDGQPELSIRFDHAR 770
              +    P++  L   +L  L+      +  +  +  F   +  L+  +PE  I+ +  +
Sbjct: 647  GGRRGSMPVQYVLQATNLEKLEEVLPKFMAKVYENPVFQMADVDLKFSKPEARIQINRDK 706

Query: 771  LAALGMDAPTVANRIAQRVGGTVASQYTVRDRKIDILVRSQLDERDQISDIDTLIINPDS 830
             + +G+    +A  +   + G     + +  ++ +IL      +R++ +D+  + +   S
Sbjct: 707  ASIMGVSTKNIAQTLQYGLSGQRMGYFYMNGKQYEILGEINRQQRNKPADLKAIYVRSSS 766

Query: 831  SQPIALSAVAEVSLQLGPSAINRISQQRVALVSANLAYGDLSDAVADAQQILAAQVLPTS 890
               I L  + E+   + P  + R ++   A +SA LA G       D    +A + L  +
Sbjct: 767  GDMIQLDNLIELESGIAPPKLYRYNRFVSATISAGLADGKTIGQGLDEMDKIAKETLDDT 826

Query: 891  VQARFGGQNEEMEHSFQSLKIALILAVFLVYLVMASQFESLLHPLLILVAVPMALAGSVL 950
             +    G ++E   S  SL  A ILA+ L+YL++A+QFES   PL+I++ VP+A+AG+++
Sbjct: 827  FRTALSGDSKEYRESSSSLMFAFILAILLIYLILAAQFESFKDPLIIMLTVPLAIAGALV 886

Query: 951  GLYITQTHLSVVVFIGLIMLAGIVVNNAIVLVDRINQLRSEGVEKLEAIRVAAKSRLRPI 1010
             +Y     +++   IG+IML G+V  N I++V+  NQ +  G +K+ AI+ AA  RLRPI
Sbjct: 887  FMYFGDITMNIFSQIGIIMLIGLVAKNGILIVEFANQKQEAGEDKMSAIKDAALQRLRPI 946

Query: 1011 MMTTLTTVLGLLPMALGLGDGAEVRAPMAITVIFGLSLSTLLTLIVIPVLYA 1062
            +MT+ +TVLGL+P+A   G+G   R  M   V+ G+ +STLLT+ ++P +Y+
Sbjct: 947  LMTSASTVLGLIPLAFATGEGCNQRIAMGTAVVGGMVVSTLLTMYIVPAIYS 998