Pairwise Alignments

Query, 293 a.a., transcriptional regulator, LysR family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 300 a.a., LysR family transcriptional regulator from Pseudomonas simiae WCS417

 Score = 99.4 bits (246), Expect = 9e-26
 Identities = 73/285 (25%), Positives = 142/285 (49%), Gaps = 11/285 (3%)

Query: 2   DIRQLKHLDALAITGSFTAAAKKLNMAQPALSQSIKRLELSLGVTLINRTSNKHDKHLAL 61
           D+  L+   A+   GSF  AA+ + ++QPALS+ I++LE +L V L  RT+ +    ++L
Sbjct: 6   DLNDLQAFRAVVDKGSFRGAAEAIRISQPALSRRIEKLETALDVKLFERTTRR----VSL 61

Query: 62  TAEGLVLHQHATLILKQIKQAEAQIRAMANLTSGEVRIAVPGMLGSFYLPSRLMAFRHQY 121
           T  G         +L  +  A   I  +A+   G V IA       +++P  +  F   Y
Sbjct: 62  TMVGRAFLPKVERMLDDLDLALMGISNVASTRMGNVTIACVPSTAYYFMPHVISEFHKLY 121

Query: 122 PELKLSLFEGGTRDALRMLQQEEVDIAIITAQDLQPDFDSQLLIREQMVIAMGAEHPLAE 181
           P+++L + +    +    ++  E D  +  +  L  D + +LL++E+ V+A   +HPLA+
Sbjct: 122 PKIRLRVLDASAGEVCNAVESGEADFGVSFSGSLADDVEFELLLQERYVLACRRDHPLAQ 181

Query: 182 LPAVSLNDFFDHELVMFKTGYFHREWILSQAKD--LGKKPNIAFETNLINLIKQIVSQGF 239
             +V  ++ ++H+ +       +R ++L QA      KKP+I  ET+ +  +  +V  G 
Sbjct: 182 RDSVPWSEAYEHDYITVDKTSGNR-FLLDQALRGVRVKKPSIC-ETHHVTTMIGLVEAGL 239

Query: 240 GITSVLEMAISPKDD--ILAKPF-DPPVFLNLHIAWKKQRPVSQA 281
           G+  V  +A+   +   +++ P  +P V  N+ +  ++ R +  A
Sbjct: 240 GVAMVPSIAMPAVEHPILVSVPLVEPQVMRNVGLIKRRGRTLPPA 284