Pairwise Alignments

Query, 293 a.a., transcriptional regulator, LysR family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 301 a.a., transcriptional regulator, LysR family from Pseudomonas putida KT2440

 Score =  106 bits (265), Expect = 6e-28
 Identities = 80/295 (27%), Positives = 142/295 (48%), Gaps = 7/295 (2%)

Query: 1   MDIRQLKHLDALAITGSFTAAAKKLNMAQPALSQSIKRLELSLGVTLINRTSNKHDKHLA 60
           M+++QL+   A+A   SF  A + L+++QPALS +IK LE +LG  L++RT+    + ++
Sbjct: 1   MNVKQLRAFVAVAKYQSFAQAGEHLHVSQPALSLTIKALEENLGGALLSRTT----RSVS 56

Query: 61  LTAEGLVLHQHATLILKQIKQAEAQIRAMANLTSGEVRIAVPGMLGSFYLPSRLMAFRHQ 120
           LTAEG VL   A  +L      E  +R    L  G V +A         LP  L  FR +
Sbjct: 57  LTAEGEVLLPLARRLLADWDDTEEMLRQRFTLQLGRVSVAAMPAFAGNLLPHSLKVFRQR 116

Query: 121 YPELKLSLFEGGTRDALRMLQQEEVDIAIITAQDLQPDFDSQLLIREQMVIAMGAEHPLA 180
           YP++ +++ +        +++   V++ I    D     D   L  ++ V  + A+ PLA
Sbjct: 117 YPKVNVTVHDVINEQVQELVRHRRVELGIGFEPDNIDGLDFHPLYMDRFVAVVAADSPLA 176

Query: 181 ELPAVSLNDFFDHELVMFKTGYFHREWILSQAKDLGKKPNIAFETNLINLIKQIVSQGFG 240
            LP VS       + V  +     R  +         K  +AFE++ +  I ++V+ G G
Sbjct: 177 LLPQVSWAQLMAEDFVALQRPSAVRLLMEQNVAARHGKLAVAFESHQLTTIGRMVASGLG 236

Query: 241 ITSVLEMAISPKDDILAK---PFDPPVFLNLHIAWKKQRPVSQADRAFVEFLMKN 292
           +++V  + I+   ++ A+     +P V   + +    +  +S A +A +E L+ N
Sbjct: 237 VSAVPALCINQMQELGARCVTLVEPTVERRIGVIALSEHKLSTAAQALLEVLLSN 291