Pairwise Alignments

Query, 293 a.a., transcriptional regulator, LysR family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 303 a.a., Transcriptional regulator, LysR family from Pseudomonas putida KT2440

 Score =  105 bits (262), Expect = 1e-27
 Identities = 76/292 (26%), Positives = 136/292 (46%), Gaps = 10/292 (3%)

Query: 3   IRQLKHLDALAITGSFTAAAKKLNMAQPALSQSIKRLELSLGVTLINRTSNKHDKHLALT 62
           +RQLK+       GS   A+++L +AQP++S +IK LE S GV L  R    H + ++LT
Sbjct: 6   LRQLKYFVTTVEAGSVAEASRQLYIAQPSISTAIKSLEESFGVQLFIR---HHAQGVSLT 62

Query: 63  AEGLVLHQHATLILKQIKQAEAQIRAMANLTSGEVRIAVPGMLGSFYLPSRLMAFRHQYP 122
             G   +     +L+   + E    A  +  +G++ I     +   YLP  +  FR +YP
Sbjct: 63  PSGKRFYAKTKSLLQMAHEFEQNALADNDTVAGQIDIGCFETVAPLYLPRLIAGFRQRYP 122

Query: 123 ELKLSLFEGGTRDALRMLQQEEVDIAIITAQDLQPDFDSQLLIREQM-VIAMGAEHPLAE 181
            + + L +G  +D ++ L     D+A +   DL    +++ L+  Q   + +   H  A 
Sbjct: 123 GVDIRLRDGEQQDLIQGLTAGTFDLAFLYDHDLDGTIEAEPLMPPQKPYVLLPENHRFAS 182

Query: 182 LPAVSLNDFFDHELVMFKTGYFHREWILSQAKDLGKKPNIAFETNLINLIKQIVSQGFGI 241
              VSL D     +++       R + +S   ++G  PNI F +  I +++ +V QGFG 
Sbjct: 183 QAQVSLRDLCPEPMILLDVAP-SRTYFVSLFNEMGLAPNIVFSSPSIEMVRGMVGQGFGF 241

Query: 242 TSVL-----EMAISPKDDILAKPFDPPVFLNLHIAWKKQRPVSQADRAFVEF 288
           + ++     E     +   +    +P     L  AW K+  +++  + FVEF
Sbjct: 242 SLLVTRPHSEYTYDGQRLAMLDIAEPVALSGLAAAWLKRVQLTKPAQLFVEF 293