Pairwise Alignments

Query, 609 a.a., excinuclease ABC, C subunit (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 613 a.a., excinuclease ABC subunit UvrC from Rhodanobacter sp000427505 FW510-R12

 Score =  561 bits (1447), Expect = e-164
 Identities = 288/612 (47%), Positives = 412/612 (67%), Gaps = 14/612 (2%)

Query: 5   FNAQSFLRTVTSSAGVYRMYDVKGDVIYVGKAKDLKKRLSSYFRKNLGNVKTQALVSHIH 64
           F+ ++F+RT+T+S GVYR +D  G+++YVGKA +LKKR+ SYF K     +  A+V+ I 
Sbjct: 9   FDGKAFVRTLTTSPGVYRHFDAAGELLYVGKAGNLKKRVGSYFLKPRMEPRIAAMVAQIA 68

Query: 65  HIDVTLTHSETDALLLENDYIKQYMPKYNVLLRDDKSYPYILLSQHE-HPRLAYHRGPQR 123
            +++T+T +E +ALLLE+  IK   P+YN+LLRDDKSYPYI LS  E +PRLA+HRG + 
Sbjct: 69  RVEITVTRTEGEALLLESQLIKSLKPRYNILLRDDKSYPYIYLSTGEDYPRLAFHRGAKN 128

Query: 124 EKGHYFGPYPNGGAVRESLHLMQKLFPIRQCDDLYYKSRTRPCLQYQLSRCSAPCVGKVS 183
             G YFGPYP+  AVRESL+LMQKLF +RQC+D Y+++RTRPCL YQ+ RCSAPCVG +S
Sbjct: 129 LPGRYFGPYPSVYAVRESLNLMQKLFKVRQCEDSYFRNRTRPCLLYQIGRCSAPCVGLIS 188

Query: 184 NAEYDEQVKLASLFLKGKDKQVISELVAKMEEAAEQQAYEQAARFRDQIMALRRVAEQQE 243
             +Y   V+ A +FL+G+   VI EL   ME+A++   +E+AA+ RDQ+ ALR++  Q  
Sbjct: 189 VEDYRNDVRHAEMFLEGRSNAVIDELAEAMEQASKALQFERAAKLRDQVAALRQLQAQHH 248

Query: 244 VSGNTGDMDVIGVHYASGIACFHLLFIREGKIFGSRSYYPTVPAQTDIEEVLRSFLLQFY 303
           V G + DMDV+     +G+AC  +LF R+G   G+R ++P +P   +  +VL  F+ Q+Y
Sbjct: 249 VQGASADMDVLACRIEAGMACVSVLFFRDGISLGTRDFFPRLPLDAEPADVLAQFITQYY 308

Query: 304 LNADIQRTIPKEVVISHHFEELHELEAAVSEALNKKFSIKTNVRADRASFLRLAITNATN 363
           L+    R +P+E+++     +   L   + +       +K++VR +RA FL++A  NA  
Sbjct: 309 LD----RPVPRELILGEPLADQEILAELLGQQAGHAVDLKSSVRGERAQFLQMAERNAQA 364

Query: 364 AVMTRLSHKNTVEQRFVLLEEILELNAPIQRMECFDISHTMGESTVASCVVFNREGPHKA 423
           ++  RL+ + T+  RF  L+++L L+   +R+ECFDISHTMGE TVASCVVF  EGP K+
Sbjct: 365 SLTARLASRQTLGTRFDDLQKVLGLDESPRRIECFDISHTMGELTVASCVVFGPEGPEKS 424

Query: 424 EYRRYNIEGITPGDDYAAMKQAISRRFDKI-DASGKIPDILFIDGGLGQLRIAQQIVDEK 482
            YRR+NI GITPGDDYAAM QA++RRF K+ +  G  PD+L IDGG GQ+  A  ++ E 
Sbjct: 425 HYRRFNITGITPGDDYAAMHQALTRRFRKLAEGEGARPDVLLIDGGSGQVAQALGVLREL 484

Query: 483 FVNLDKAPQLIGVAKGESRKPGLETLIFGDTETSFSLED-----DSPALHLIQHIRDESH 537
            V+     +++GVAKG  R+ G ETL+    E+     +      SPALHL+  +RDE+H
Sbjct: 485 GVD---GIEVVGVAKGPGRRAGEETLVLARLESGSPGRELHPGSSSPALHLVAAVRDEAH 541

Query: 538 RFAITGHRNRRQKTRNTSTLESIPGIGPKRRKALLQHLGGLQEVKGASVAELAKVPGISI 597
           RFAI+GHR RR+K R  S LE +PGIG +RR ALL+  GG+Q ++ A V EL +V GI  
Sbjct: 542 RFAISGHRKRREKAREHSVLEDVPGIGARRRSALLKAFGGMQGLERAGVEELMQVKGIDR 601

Query: 598 EMAQTIHDALRG 609
            +A+ I+ +L G
Sbjct: 602 GLAERIYASLHG 613