Pairwise Alignments

Query, 640 a.a., ABC transporter, ATP-binding protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 559 a.a., energy-dependent translational throttle protein EttA from Magnetospirillum magneticum AMB-1

 Score =  323 bits (827), Expect = 2e-92
 Identities = 185/528 (35%), Positives = 299/528 (56%), Gaps = 9/528 (1%)

Query: 6   INNGSLAY-GYTPLLQNADFTIERGERVCIVGRNGAGKSSLLKILSGDVLLDEGEFNIDG 64
           + N + AY G   +++    +   G ++ ++G NGAGKS+LLKI++G      GE     
Sbjct: 10  MKNLTKAYPGGKEIMKGLTLSFLPGAKIGVLGVNGAGKSTLLKIMAGIDKEYGGEAWAAE 69

Query: 65  SVTVSRLQQDPPKAEQGTVYAYIAAGLKEVGEALEQYHQLSHDVAFAEP---EQMERMLN 121
            V +  L Q+P       V   +   + E    L+++ ++S    FAE    ++M  ++ 
Sbjct: 70  GVKIGYLAQEPHLDPAKDVMGNVMEAVAETKALLDRFEEVS--AKFAEELSDDEMNDLIA 127

Query: 122 QMQKLQETLDHHNGWQLDSRINQNCELLGLDP-DKSLSELSGGWQRKVALARALVSAPDL 180
           +  +LQE +DH N W L   I    + L   P D  ++ LSGG +R++AL R L+S PD+
Sbjct: 128 EQGELQEKIDHLNAWDLTRTIEIAMDALRCPPGDADVTTLSGGERRRIALCRLLLSHPDM 187

Query: 181 LLLDEPTNHLDIDTIEWLEKFLLDFQGAIVFISHDRGFIARMATRIVDLDRGVVTSWPGN 240
           LLLDEPTNHLD +++ WLE+FL D+ G +V I+HDR F+  +   I++L+RG    + GN
Sbjct: 188 LLLDEPTNHLDAESVAWLERFLEDYSGTVVMITHDRYFLDNVTGWILELERGHGIPYEGN 247

Query: 241 YQAYLDGKQEWLRVEAEKNALFDKRLADEEVWIRQGVKARRTRNEGRVRALKALRQERSE 300
           Y ++L+ K + L  E  +     + + DE  W+R   KAR+T+++ R+ A + L  +  E
Sbjct: 248 YTSWLEQKGKRLEQEEREETARMRAIRDELEWVRSSPKARQTKSKARISAFEDLVAKSQE 307

Query: 301 RLNRQGNAKMAVADTERSGKLVFDVKDLNYNLPDKNLVKNFNTTVLRGDRIALIGPNGCG 360
           +    G A +++    R G  V + ++++    D  L +N N  +  G  + +IGPNG G
Sbjct: 308 KAT--GPAVISIPPGPRLGGKVIEAENVSKAFGDNLLYENLNFRLPPGGIVGIIGPNGAG 365

Query: 361 KSTLIKLLIEKLQPQSGEVKVGTKLEIAYFDQYREALDPEQTVEDNVGEGKKTITINGQD 420
           K+TL +++  + QP +G   VG  + + Y DQ R++LDP++T  + + +G++ I +  + 
Sbjct: 366 KTTLFRMITGQEQPTTGSFTVGETVVLGYVDQSRDSLDPDKTAFEEISDGQEEIDLGKRK 425

Query: 421 RHILSYLQDFLFSPMRARTPVKALSGGEKNRLLLAKLLIRPANLIILDEPTNDLDIETLE 480
            +  +Y   F F     +  V  LSGGE+NR+ LAK+L RPAN+I+LDEPTNDLD+ETL 
Sbjct: 426 INARAYAGLFNFKGADQQKKVGVLSGGERNRVHLAKMLSRPANVILLDEPTNDLDVETLS 485

Query: 481 LLESLLTEYEGTLLLVSHDRAFIDNTVTSSWWYAGNGHWTEYVGGYQD 528
            LE  L E+ G  +++SHDR F+D   T    + G+     + G YQD
Sbjct: 486 ALEDALAEFPGCAVVISHDRFFLDRIATHILAFEGDSQVVWFEGNYQD 533



 Score =  102 bits (253), Expect = 6e-26
 Identities = 77/262 (29%), Positives = 118/262 (45%), Gaps = 46/262 (17%)

Query: 3   LVRINNGSLAYGYTPLLQNADFTIERGERVCIVGRNGAGKSSLLKILSGDVLLDEGEFNI 62
           ++   N S A+G   L +N +F +  G  V I+G NGAGK++L ++++G      G F +
Sbjct: 327 VIEAENVSKAFGDNLLYENLNFRLPPGGIVGIIGPNGAGKTTLFRMITGQEQPTTGSFTV 386

Query: 63  D-----GSVTVSRLQQDPPKAEQGTVYAYIAAGLKEVGEALEQYHQLSHDVAFAEPEQME 117
                 G V  SR   DP K    T +  I+ G +E+     + +  ++   F       
Sbjct: 387 GETVVLGYVDQSRDSLDPDK----TAFEEISDGQEEIDLGKRKINARAYAGLF------- 435

Query: 118 RMLNQMQKLQETLDHHNGWQLDSRINQNCELLGLDPDKSLSELSGGWQRKVALARALVSA 177
                                           G D  K +  LSGG + +V LA+ L   
Sbjct: 436 -----------------------------NFKGADQQKKVGVLSGGERNRVHLAKMLSRP 466

Query: 178 PDLLLLDEPTNHLDIDTIEWLEKFLLDFQGAIVFISHDRGFIARMATRIVDLDRGVVTSW 237
            +++LLDEPTN LD++T+  LE  L +F G  V ISHDR F+ R+AT I+  +      W
Sbjct: 467 ANVILLDEPTNDLDVETLSALEDALAEFPGCAVVISHDRFFLDRIATHILAFEGDSQVVW 526

Query: 238 -PGNYQAYLDGKQEWLRVEAEK 258
             GNYQ Y   +   L  +A++
Sbjct: 527 FEGNYQDYEADRHRRLGTDADQ 548