Pairwise Alignments

Query, 640 a.a., ABC transporter, ATP-binding protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 604 a.a., elongation factor 3 from Magnetospirillum magneticum AMB-1

 Score =  453 bits (1166), Expect = e-132
 Identities = 261/643 (40%), Positives = 382/643 (59%), Gaps = 59/643 (9%)

Query: 3   LVRINNGSLAYGYTPLLQNADFTIERGERVCIVGRNGAGKSSLLKILSGDVLLDEGEFNI 62
           L+ + +  L +G TPL +     + +G++ C+VGRNG+GKS+LLK+L+G++L D GE  +
Sbjct: 6   LLALRDVRLTFGGTPLFEGVTTWVAKGDKTCLVGRNGSGKSTLLKVLAGEILPDSGERFV 65

Query: 63  DGSVTVSRLQQDPPKAEQGTVYAYIAAGLKEVGEALEQYHQLSHDVAFAEPEQMERMLNQ 122
               +++ L QDP      T+  Y+A GL                   AE +QM R    
Sbjct: 66  QPGASIAVLPQDPIILAP-TIADYVAQGLPP-----------------AERDQMYR---- 103

Query: 123 MQKLQETLDHHNGWQLDSRINQNCELLGLDPDKSLSELSGGWQRKVALARALVSAPDLLL 182
                              ++   + +G+D  +    LSGG  R+ ALARALV  PD LL
Sbjct: 104 -------------------VDAVLDAVGIDGARDPVALSGGEGRRAALARALVGQPDALL 144

Query: 183 LDEPTNHLDIDTIEWLEKFLLDFQGAIVFISHDRGFIARMATRIVDLDRGVVTSWPGNYQ 242
           LDEPTNHLD+ TI WLE++L  + GA+V ISHDR F+  ++ + + L+RGVV      ++
Sbjct: 145 LDEPTNHLDLPTILWLEEWLSSYGGALVMISHDRRFLETVSKQTLWLERGVVRRAEFGFE 204

Query: 243 AYLDGKQEWLRVEAEKNALFDKRLADEEVWIRQGVKARRTRNEGRVRALKALRQERSERL 302
            +   + E    E  + A  + R+  E  W+ +GV ARR RN GR+RAL+ LR ER+ER 
Sbjct: 205 KFPAWQDEVFAAEEAELARMNTRMRQEMHWLARGVTARRKRNMGRLRALQGLRSERAERK 264

Query: 303 N------RQGNAKMAVADTERSGKLVFDVKDLNYNLPDKNLVKNFNTTVLRGDRIALIGP 356
           +      RQ N  +A    + SG+LV + +++     DK + ++F+T +LRGDR+ LIGP
Sbjct: 265 SQVLAAGRQVN--LATDSGDLSGRLVIEAENVTKAFGDKRICQDFSTRILRGDRVGLIGP 322

Query: 357 NGCGKSTLIKLLIEKLQPQSGEVKVGTKLEIAYFDQYREALDPEQTVEDNVGEGK-KTIT 415
           NG GK+TL+++L  +L P  G V++GT LE AYFDQ R ALDP+++V D + +G+   + 
Sbjct: 323 NGAGKTTLLRMLTGELAPDGGVVRLGTNLETAYFDQRRAALDPDKSVWDTLTDGRGDNVW 382

Query: 416 INGQDRHILSYLQDFLFSPMRARTPVKALSGGEKNRLLLAKLLIRPANLIILDEPTNDLD 475
           + G  +H++ Y++DFLFS  +ARTPV+ALSGGE+NRLLLAKLL +P+NL+ILDEPTNDLD
Sbjct: 383 VRGTPQHVVGYMKDFLFSEAQARTPVRALSGGERNRLLLAKLLAKPSNLLILDEPTNDLD 442

Query: 476 IETLELLESLLTEYEGTLLLVSHDRAFIDNTVTSSWWYAGNGHWTEYVGGYQDAIDQGAK 535
           +ETL+LLE +L +Y+GTLL+VSHDR F+D  VTS     G+   +EYVGGY D + Q   
Sbjct: 443 METLDLLEEVLADYDGTLLVVSHDRDFLDRLVTSVIAVEGDAEVSEYVGGYSDYLRQ--- 499

Query: 536 FYSEEPSQTNTVEAPATAKTAEVKVAEPAKAAKKLSYKFQRELEAMPELMEKLEAEILEL 595
                    N    P +   A+ K   P  A  +LSY  QREL+ +P  ++KL AEI +L
Sbjct: 500 ---RPAKPANAAPKPPSKPQAQPK---PQSARTRLSYNEQRELDQLPSRIDKLTAEIAKL 553

Query: 596 QTTVASPDFYSQTQDKINQVLSLLADKEKQLEVCFERWEELES 638
           +T +A P  Y++   +   + +       +L+    RW ELE+
Sbjct: 554 ETDLADPALYAKDAARFQTLAARAEAARAELDDAEVRWLELEA 596