Pairwise Alignments

Query, 640 a.a., ABC transporter, ATP-binding protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 635 a.a., COG0488: ATPase components of ABC transporters with duplicated ATPase domains from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  712 bits (1838), Expect = 0.0
 Identities = 361/640 (56%), Positives = 469/640 (73%), Gaps = 8/640 (1%)

Query: 1   MSLVRINNGSLAYGYTPLLQNADFTIERGERVCIVGRNGAGKSSLLKILSGDVLLDEGEF 60
           MSL+ ++   L++   PLL NA+  IE  ERVC+VGRNGAGKS+L+KIL+ +  LD+G  
Sbjct: 1   MSLISMHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNREQGLDDGRI 60

Query: 61  NIDGSVTVSRLQQDPPKAEQGTVYAYIAAGLKEVGEALEQYHQLSHDVAFAEPEQMERML 120
             +  + V+RLQQDPP+   G+VY ++A G++E  E L++YH++S  +   +P   E+ L
Sbjct: 61  IYEQDLIVARLQQDPPRNIAGSVYDFVAEGIEEQAEYLKRYHEISR-LVMTDPS--EKNL 117

Query: 121 NQMQKLQETLDHHNGWQLDSRINQNCELLGLDPDKSLSELSGGWQRKVALARALVSAPDL 180
           N+M ++QE LDHHN WQL++RIN+    LGLDP+ +LS LSGGW RK AL RALVS P +
Sbjct: 118 NEMARVQEQLDHHNLWQLENRINEVLAQLGLDPNAALSSLSGGWLRKAALGRALVSNPRV 177

Query: 181 LLLDEPTNHLDIDTIEWLEKFLLDFQGAIVFISHDRGFIARMATRIVDLDRGVVTSWPGN 240
           LLLDEPTNHLDI+TI+WLE FL  F G I+FISHDR FI  MATRIVDLDRG + ++PGN
Sbjct: 178 LLLDEPTNHLDIETIDWLEGFLKTFNGTIIFISHDRSFIRNMATRIVDLDRGKLVTYPGN 237

Query: 241 YQAYLDGKQEWLRVEAEKNALFDKRLADEEVWIRQGVKARRTRNEGRVRALKALRQERSE 300
           Y  YL  K+E LRVE  +NA FD++LA EEVWIRQG+KARRTRNEGRVRALKA+R+ERSE
Sbjct: 238 YDQYLLEKEEALRVEELQNAEFDRKLAQEEVWIRQGIKARRTRNEGRVRALKAMRRERSE 297

Query: 301 RLNRQGNAKMAVADTERSGKLVFDVKDLNYNLPDKNLVKNFNTTVLRGDRIALIGPNGCG 360
           R    G AKM V +  RSGK+VF++++++Y +  K LVK+F+  V RGD+IALIGPNGCG
Sbjct: 298 RREVMGTAKMQVEEATRSGKIVFEMENVDYQVEGKQLVKDFSAQVQRGDKIALIGPNGCG 357

Query: 361 KSTLIKLLIEKLQPQSGEVKVGTKLEIAYFDQYREALDPEQTVEDNVGEGKKTITINGQD 420
           K+TL+KL++ +LQ  SG + VGTKLE+AYFDQ+R  LDPE+TV DN+ EGK+ + +NG+ 
Sbjct: 358 KTTLLKLMLGQLQADSGRIHVGTKLEVAYFDQHRAELDPEKTVMDNLAEGKQEVMVNGKP 417

Query: 421 RHILSYLQDFLFSPMRARTPVKALSGGEKNRLLLAKLLIRPANLIILDEPTNDLDIETLE 480
           RH+L YLQDFLF P RA TPV+ALSGGE+NRLLLA+L ++P+NL+ILDEPTNDLD+ETLE
Sbjct: 418 RHVLGYLQDFLFHPKRAMTPVRALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLE 477

Query: 481 LLESLLTEYEGTLLLVSHDRAFIDNTVTSSWWYAGNGHWTEYVGGYQDAIDQGAKFYSEE 540
           LLE L+  Y+GT+LLVSHDR F+DNTVT  W + G G    Y+GGY DA  Q  +  + +
Sbjct: 478 LLEELIDGYQGTVLLVSHDRQFVDNTVTECWIFEGGGKIGRYIGGYHDARAQQEQHLATK 537

Query: 541 PSQTNTVEAPATAKTAEVKVAEPAKAAKKLSYKFQRELEAMPELMEKLEAEILELQTTVA 600
                  E     K   VK     + + KLSYK QRELE +P  +E LEA++  LQ  VA
Sbjct: 538 QPMAKKNEEVIAPKAEIVK-----RGSSKLSYKLQRELEQLPGQLEDLEAKLEALQAQVA 592

Query: 601 SPDFYSQTQDKINQVLSLLADKEKQLEVCFERWEELESLK 640
              F+SQ  ++  +VL+ L+  E++LE  FERWE LE LK
Sbjct: 593 DAAFFSQPHEQTQKVLADLSQAEQELEQAFERWEYLEGLK 632