Pairwise Alignments

Query, 711 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 754 a.a., 50S rRNA methyltransferase from Pseudomonas simiae WCS417

 Score =  568 bits (1465), Expect = e-166
 Identities = 307/748 (41%), Positives = 434/748 (58%), Gaps = 48/748 (6%)

Query: 5   FAAAPKGFEYSLAQELTEFGATEIKESVAGVYFTAPLTLAYRITLWTRLASRIVLVIYKG 64
           F   PKG E  L +E    G  E +E  + V   A +  AYR+ LW+RLA+R++LV+ + 
Sbjct: 8   FLTCPKGLEGLLIEEAVGLGLEEAREHTSAVRGMADMETAYRLCLWSRLANRVLLVLKRF 67

Query: 65  PCESAEQLYNAAYCIDWSAHFSNRNTFSIDFHGTGGFINNTQFGALKIKDAIVDRFRDDG 124
           P + AE LY+    I+W+ H     T +++F G G  I+NT FGALK+KDAIVD+ R   
Sbjct: 68  PMKDAEDLYHGVLDIEWADHMVPDGTLAVEFSGHGSGIDNTHFGALKVKDAIVDKLRTPT 127

Query: 125 DARPNVARIDADIKVDAHFRNGVITIAMNFSGPSLHQRGYRSTTGEAPLKENLAANMLVR 184
             RP++ +I+ D+++      G   ++++ SG SLHQRGYR   G APLKENLAA +L+R
Sbjct: 128 GERPSIDKINPDLRIHLRLDRGEAILSLDLSGHSLHQRGYRLQQGAAPLKENLAAAILIR 187

Query: 185 SGWK---AAPTTLLDPFCGSGTVLIEAALMAADIAPGLQRNRFGFEHWRRHDKATWHEIV 241
           +GW    A    L DP CG GT L+E A++AAD+AP L R  +GF  W  H  A W ++ 
Sbjct: 188 AGWPRIAAEGGALSDPMCGVGTFLVEGAMIAADMAPNLNRELWGFTTWLGHVPALWKKLH 247

Query: 242 EEAKARASLGVKRCEVKFYGSDIDSRLVALAKRNAQNAGVLELIEFNVANALNVEPPAAE 301
            EA  RA++G+ +  +   G + D RL+  A+ N + AG+   I+         EP   +
Sbjct: 248 AEAAERAAVGMNKPPLWIRGYEADPRLIQPARNNIERAGLSHWIKVYQGEVGTFEPRPDQ 307

Query: 302 ---GYLITNPPYGERLGSVSELLQLYYQLGDKFKKEFGGWKVAMLCSDIELISALKLKAD 358
              G +I NPPYGERLG  + LL LY  LG++ ++   GW+ A+     +L   + +++ 
Sbjct: 308 NQKGLVICNPPYGERLGDEASLLYLYQNLGERLRQACMGWEAAVFTGAPDLGKRMGIRSH 367

Query: 359 KQMKMFNGALECAFNLYTLHA---------------------------------QSTRRD 385
           KQ   +NGAL C   L  ++                                  Q  +  
Sbjct: 368 KQYSFWNGALPCKLLLIKVNPDQFVTGERRTPEQRQAEREQAAYDQAPAEPQERQYNKNG 427

Query: 386 TPVLPEGVDIADIA------PAFANRIKKNAKQFEKWAQKEGIDSYRLYDADIPEYNVAV 439
            P+ P    + + A        FANR++KN K   KWA++EG+D YR+YDAD+PEY++A+
Sbjct: 428 NPIKPAPAPVVEQARLSEGGQMFANRLQKNLKLLGKWAKREGVDCYRVYDADMPEYSMAI 487

Query: 440 DKYLDYVVVQEYMAPASIPEAVTKRRLSDVLLALPAAIGVDPHKIIMKTRERQKGTNQYQ 499
           D Y D+V VQEY AP SI       R+ D L A+P A+ +D  ++++K RERQ GT QY+
Sbjct: 488 DLYHDWVHVQEYAAPKSIDPEKASARMFDALAAIPQALNIDKSRVVVKRRERQSGTKQYE 547

Query: 500 KLDERKLELITTEYGAKFKLNLTGYLDTGLFLDHRLTRRLVGQKSKGRRVLNLFSYTGSA 559
           +   +      +E G K  +NLT YLDTGLFLDHR  R  + +++ G+R LNL+ YT +A
Sbjct: 548 RQSAQGKFTEVSEGGVKLLVNLTDYLDTGLFLDHRPMRLRIQKEAAGKRFLNLYCYTATA 607

Query: 560 SVHAALGGAKSVTTVDMSNTYLAWAKENFALNNLSGKQYEFVQADCLQWIRDCNEQYDLI 619
           SVHAA GGA+S T+VD+S TYL WA+ NF+LN  S K     Q D + W+    +++DLI
Sbjct: 608 SVHAAKGGARSTTSVDLSKTYLDWARRNFSLNGFSDKN-RLEQGDVMAWLETSRDEFDLI 666

Query: 620 FIDPPTFSNSKRMEDSFDVQRDHVNLLGMLIKLLSPNGELVFSNNKRKFKMDTETLTKMK 679
           FIDPPTFSNSKRME  FDVQRDHV LL + +  L+P G L FSNN RKF ++ + L++ +
Sbjct: 667 FIDPPTFSNSKRMEGIFDVQRDHVQLLDLAMARLAPGGVLYFSNNFRKFALE-DNLSE-R 724

Query: 680 IKVQNIDDMTLPLDYKRNPHIHNTWLIT 707
             V+ I D T+  D+ RN  IH  W IT
Sbjct: 725 YAVEEISDKTIDPDFARNAKIHRAWKIT 752