Pairwise Alignments

Query, 711 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 745 a.a., fused 23S rRNA m2G2445 methyltransferase and 23S rRNA m7G2069 methyltransferase from Pseudomonas putida KT2440

 Score =  595 bits (1535), Expect = e-174
 Identities = 310/721 (42%), Positives = 438/721 (60%), Gaps = 24/721 (3%)

Query: 5   FAAAPKGFEYSLAQELTEFGATEIKESVAGVYFTAPLTLAYRITLWTRLASRIVLVIYKG 64
           +   PKG E  LA+E    G  E++E  + +   A +  AYR+ +W+RLA+R++LV+ + 
Sbjct: 23  YLTCPKGLESLLAEEAKGLGLDEVREHTSAIRGAADMETAYRLCVWSRLANRVLLVLKRF 82

Query: 65  PCESAEQLYNAAYCIDWSAHFSNRNTFSIDFHGTGGFINNTQFGALKIKDAIVDRFRDDG 124
             ++A+ LY+  + +DW+ H +   T +++F G G  I+NT FGALK+KDAIVD+ R+  
Sbjct: 83  SMKNADDLYDGVHAVDWADHLAADGTLAVEFSGHGSGIDNTHFGALKVKDAIVDKLRNRE 142

Query: 125 DARPNVARIDADIKVDAHFRNGVITIAMNFSGPSLHQRGYRSTTGEAPLKENLAANMLVR 184
             RP+V +ID D++V      G   ++++ SG SLHQRGYR   G APLKENLAA +L+R
Sbjct: 143 GLRPSVEKIDPDVRVHLRLDRGEAILSLDLSGHSLHQRGYRLQQGAAPLKENLAAAVLIR 202

Query: 185 SGW---KAAPTTLLDPFCGSGTVLIEAALMAADIAPGLQRNRFGFEHWRRHDKATWHEIV 241
           +GW    A    L DP CG GT L+EAA++AADIAP L+R R+GF  W  H  A W ++ 
Sbjct: 203 AGWPRIAAEGGALADPMCGVGTFLVEAAMIAADIAPNLKRERWGFSAWLGHVPALWRKVH 262

Query: 242 EEAKARASLGVKRCEVKFYGSDIDSRLVALAKRNAQNAGVLELIEFNVANALNVEP---P 298
           +EA+ARA  G+ +  +   G + D RL+   + N + AG+ + ++         EP    
Sbjct: 263 DEAQARAQAGLAKPPLWIRGYEADPRLIQPGRNNVERAGLGDWVKIYQGEVSTFEPRPDQ 322

Query: 299 AAEGYLITNPPYGERLGSVSELLQLYYQLGDKFKKEFGGWKVAMLCSDIELISALKLKAD 358
             +G +I+NPPYGERLG  + LL LY  LG++ ++   GW+ A+     +L   + +++ 
Sbjct: 323 NQKGLVISNPPYGERLGDEASLLYLYQNLGERLRQACMGWEAAVFTGAPQLGKRMGIRSH 382

Query: 359 KQMKMFNGALECAFNLYTL---------------HAQSTRRDTPVLPEGVDIADIAPAFA 403
           KQ   +NGAL C   L+ +                    R+  P   E   +++ A  FA
Sbjct: 383 KQYAFWNGALPCKLLLFKVQPDQFVTGERREAQPEGTEARQQVPQASEPARLSEGAQMFA 442

Query: 404 NRIKKNAKQFEKWAQKEGIDSYRLYDADIPEYNVAVDKYLDYVVVQEYMAPASIPEAVTK 463
           NR++KN KQ  KWA++E ID YRLYDAD+PEY +AVD Y D+V VQEY AP S+     +
Sbjct: 443 NRLQKNLKQLGKWARREQIDCYRLYDADMPEYALAVDLYQDWVHVQEYAAPRSVDPDKAQ 502

Query: 464 RRLSDVLLALPAAIGVDPHKIIMKTRERQKGTNQYQKLDERKLELITTEYGAKFKLNLTG 523
            RL D L A+P A+G+ P ++++K RERQ GT QY++           E G K  +NLT 
Sbjct: 503 ARLLDALAAIPQALGISPQRVVLKRRERQSGTRQYERQATEGRFQEVNEGGVKLLVNLTD 562

Query: 524 YLDTGLFLDHRLTRRLVGQKSKGRRVLNLFSYTGSASVHAALGGAKSVTTVDMSNTYLAW 583
           YLDTGLFLDHR  R  + +++ G+R LNLF YT +A+VHAA GGA+S T+VD+S TYL W
Sbjct: 563 YLDTGLFLDHRPMRMRIQREAAGKRFLNLFCYTATATVHAAKGGARSTTSVDLSKTYLDW 622

Query: 584 AKENFALNNLSGKQYEFVQADCLQWIRDCNEQYDLIFIDPPTFSNSKRMEDSFDVQRDHV 643
           A+ N ALN  S ++    Q+D + W+    + YDLIFIDPPTFSNSKRME  FDVQRDHV
Sbjct: 623 ARRNLALNGYS-ERNRLEQSDVMTWLEGNRDSYDLIFIDPPTFSNSKRMEGVFDVQRDHV 681

Query: 644 NLLGMLIKLLSPNGELVFSNNKRKFKMDTETLTKMKIKVQNIDDMTLPLDYKRNPHIHNT 703
            LL + +  L+P G L FSNN RKF++D   +   +  V+ I   TL  D+ RN  IH  
Sbjct: 682 QLLDLAMARLAPGGVLYFSNNFRKFQLDEHLMA--RYVVEEISAQTLDPDFARNNRIHRA 739

Query: 704 W 704
           W
Sbjct: 740 W 740