Pairwise Alignments

Query, 711 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 702 a.a., 23S rRNA m(2)G2445 and m(7)G2069 methyltransferases, SAM-dependent from Escherichia coli BL21

 Score =  691 bits (1783), Expect = 0.0
 Identities = 357/712 (50%), Positives = 472/712 (66%), Gaps = 13/712 (1%)

Query: 1   MLNFFAAAPKGFEYSLAQELTEFGATEIKESVAGVYFTAPLTLAYRITLWTRLASRIVLV 60
           M + FA+  +G E  L  EL   GA E +    GV+F     L Y+  +W+RLASRI+L 
Sbjct: 1   MNSLFASTARGLEELLKTELENLGAVECQVVQGGVHFKGDTRLVYQSLMWSRLASRIMLP 60

Query: 61  IYKGPCESAEQLYNAAYCIDWSAHFSNRNTFSIDFHGTGGFINNTQFGALKIKDAIVDRF 120
           + +    S   LY     I+W+  F+   TF++ F G    I N+Q+GA+K+KDAIVD F
Sbjct: 61  LGECKVYSDLDLYLGVQAINWTEMFNPGATFAVHFSGLNDTIRNSQYGAMKVKDAIVDAF 120

Query: 121 RDDGDARPNVARIDADIKVDAHFRNGVITIAMNFSGPSLHQRGYRSTTGEAPLKENLAAN 180
                 RPNV R   DI+V+        +IA++ SG  LH RGYR   G AP+KE LAA 
Sbjct: 121 TRKNLPRPNVDRDAPDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAA 180

Query: 181 MLVRSGWKAAPTTLLDPFCGSGTVLIEAALMAADIAPGLQRNRFGFEHWRRHDKATWHEI 240
           +++RSGW+   T LLDP CGSGT+LIEAA++A D APGL R R+GF  W +HD+A W E+
Sbjct: 181 IVMRSGWQPG-TPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEV 239

Query: 241 VEEAKARASLGVKRCEVKFYGSDIDSRLVALAKRNAQNAGVLELIEF---NVANALNVEP 297
             EA+ RA  G+      FYGSD D+R++  A+ NA+ AG+ ELI F   +VA   N  P
Sbjct: 240 KAEAQTRARKGLAEYSSHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLP 299

Query: 298 PAAEGYLITNPPYGERLGSVSELLQLYYQLGDKFKKEFGGWKVAMLCSDIELISALKLKA 357
               G +++NPPYGERL S   L+ L+  LG   K +FGGW +++  +  +L+S L+L+A
Sbjct: 300 KGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQFGGWNLSLFSASPDLLSCLQLRA 359

Query: 358 DKQMKMFNGALECAFNLYTLHAQSTRRDTPVLPEGVDIADIAPAFANRIKKNAKQFEKWA 417
           DKQ K  NG L+C    Y + A+ST    P +        +A  + NR++KN K+FEKWA
Sbjct: 360 DKQYKAKNGPLDCVQKNYHV-AESTPDSKPAM--------VAEDYTNRLRKNLKKFEKWA 410

Query: 418 QKEGIDSYRLYDADIPEYNVAVDKYLDYVVVQEYMAPASIPEAVTKRRLSDVLLALPAAI 477
           ++EGI+ YRLYDAD+PEYNVAVD+Y D+VVVQEY  P ++     ++RL D++ A  + +
Sbjct: 411 RQEGIECYRLYDADLPEYNVAVDRYADWVVVQEYAPPKTLDAHKARQRLFDIIAATISVL 470

Query: 478 GVDPHKIIMKTRERQKGTNQYQKLDERKLELITTEYGAKFKLNLTGYLDTGLFLDHRLTR 537
           G+ P+K+++KTRERQKG NQYQKL E+   L  TEY A   +NLT YLDTGLFLDHR+ R
Sbjct: 471 GIAPNKLVLKTRERQKGKNQYQKLGEKGEFLEVTEYNAHLWVNLTDYLDTGLFLDHRIAR 530

Query: 538 RLVGQKSKGRRVLNLFSYTGSASVHAALGGAKSVTTVDMSNTYLAWAKENFALNNLSGKQ 597
           R++GQ SKG+  LNLFSYTGSA+VHA LGGA+S TTVDMS TYL WA+ N  LN L+G+ 
Sbjct: 531 RMLGQMSKGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRA 590

Query: 598 YEFVQADCLQWIRDCNEQYDLIFIDPPTFSNSKRMEDSFDVQRDHVNLLGMLIKLLSPNG 657
           +  +QADCL W+R+ NEQ+DLIFIDPPTFSNSKRMED+FDVQRDH+ L+  L +LL   G
Sbjct: 591 HRLIQADCLAWLREANEQFDLIFIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGG 650

Query: 658 ELVFSNNKRKFKMDTETLTKMKIKVQNIDDMTLPLDYKRNPHIHNTWLITHA 709
            ++FSNNKR F+MD + L K+ +K Q I   TL  D+ RN  IHN WLIT A
Sbjct: 651 TIMFSNNKRGFRMDLDGLAKLGLKAQEITQKTLSQDFARNRQIHNCWLITAA 702