Pairwise Alignments

Query, 440 a.a., ISSod7, transposase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 448 a.a., IS4 family transposase from Paraburkholderia sabiae LMG 24235

 Score =  253 bits (647), Expect = 7e-72
 Identities = 149/412 (36%), Positives = 245/412 (59%), Gaps = 9/412 (2%)

Query: 30  IQSCLDSQGVATLRRRKLPMDAMIWAVIGMALFRGESVRSLINKLDIVLPQ-EIDYVARS 88
           I+  + + G A++RRR+LP   ++W VI +AL+R +S+  ++++LD+ LP  +  +V++S
Sbjct: 36  IEYAVQASGSASVRRRRLPAQQVVWLVIALALYRHQSISEVVDELDLALPAPDASFVSKS 95

Query: 89  AVTQARKRLGSEVVREVFSRSANTWHARAEHPH-WCGLNLYGVDGVVWRTPDSVQNQAAF 147
           A+ QAR+R+G+  +  +F  SA  W A+ +  + + G +L+ +DG   RT DSV N+  F
Sbjct: 96  AIAQARQRIGAAPLAWLFHESARNWIAQDQAKYLFKGFSLFAMDGTTLRTTDSVANRRHF 155

Query: 148 GRTANASGEA-AYPQIRMVCLMELSSHLLVNSAFDSVVENEMNLASQLISSIPNHSLTLF 206
           G +A A G   +YPQ+R V L  L++HL+ ++ F     NEM  A +LI  +P++S+T+F
Sbjct: 156 GASAAAHGRVGSYPQLRAVTLTALATHLVCDAGFGPYDINEMIWARELIPRVPDNSITVF 215

Query: 207 DRGFYSLGLLHAWQQAQPNSHWLLPLKKGTQYEVVRTLGKHDQWVKLTTTPQARKKWPQL 266
           D+GF S  +L        N H+++P +   ++EVV      DQ V++  +PQAR K P+L
Sbjct: 216 DKGFLSAQILCNLASGGENRHFIIPARSNLRWEVVSGCDG-DQIVRMRVSPQARTKCPEL 274

Query: 267 PDTLEAR-LLTKTVKGKSVAILTSLTDPMRYPSEDIVDLYAHRWEIELGYREMKQHLLES 325
           P+  +AR +L    +G+   +LTSLTD  R+ + DIV  Y  RW+I+  Y E+KQ +L  
Sbjct: 275 PEFWQARAVLAVDARGRQRTLLTSLTDRRRFKAADIVSCYERRWQIDTSYHELKQSMLGM 334

Query: 326 RFTLRSQLPELVFQELWGVLLAYNLIRYKMLLMAKSLPSVH-PNQLSFRDAASHIIFKLT 384
             TLRSQ  + V+QE WG L+AYNL R +M   A  L + H P++LSF  A   I +++T
Sbjct: 335 ELTLRSQTVQGVYQEFWGALIAYNLSRLEMARAA--LDARHAPDELSFIRAFHTIQYEMT 392

Query: 385 QLS-SQTPGNVPRDVLDIERNARQFKLDGKRERAYPRILKMSKNKFPVRSKK 435
             + +++ G +P  +  +    +Q   D +  R+  R +K    ++ VR  K
Sbjct: 393 WAAVTRSYGKLPALLRRLRERLKQLPNDKRPGRSCARAVKSRPFRYTVRFLK 444