Pairwise Alignments

Query, 440 a.a., ISSod7, transposase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 438 a.a., IS4 family transposase from Dickeya dadantii 3937

 Score =  270 bits (690), Expect = 7e-77
 Identities = 158/420 (37%), Positives = 239/420 (56%), Gaps = 7/420 (1%)

Query: 19  TCLADVLEPELIQSCLDSQGVATLRRRKLPMDAMIWAVIGMALFRGESVRSLINKLDIVL 78
           +C    +  E I   LD+   A++R+RK P + ++W V+GM L+R  S+  + +KLD+VL
Sbjct: 19  SCFQRAIPLEWISQVLDTTQKASIRKRKFPAERVVWLVVGMGLYRDRSITDVASKLDLVL 78

Query: 79  -PQEIDYVARSAVTQARKRLGSEVVREVFSRSANTWHARAEHPH-WCGLNLYGVDGVVWR 136
            P E D +A S++ QAR+RL  + +RE+F+ +A+ W  + +    W GL L+ VDG ++R
Sbjct: 79  SPHEGDTLAASSIAQARQRLSDDPLRELFTLTAHHWTQQEDKDDLWHGLRLFAVDGTLFR 138

Query: 137 TPDSVQNQAAFGRTANASGE-AAYPQIRMVCLMELSSHLLVNSAFDSVVENEMNLASQLI 195
           TPD+ +    F    +       YP +R+  LM L S L+ +  F      E++ A QL+
Sbjct: 139 TPDTPELAEHFEYIKHRPDRHTEYPMVRLCALMSLRSRLIHDVKFGPANTGEVSYAKQLL 198

Query: 196 SSIPNHSLTLFDRGFYSLGLLHAWQQAQPNSHWLLPLKKGTQYEVVRTLGKHDQWVKLTT 255
                 SLTLFDR + S  LL  WQ+ +P +HWL+PLK  T Y ++ T  + D  V++  
Sbjct: 199 PQAK--SLTLFDRCYLSAELLINWQRREPEAHWLVPLKANTTYRILDTFSEGDHLVEMQV 256

Query: 256 TPQARKKWPQLPDTLEARLLT-KTVKGKSVAILTSLTDPMRYPSEDIVDLYAHRWEIELG 314
           +PQARK    LP+  +ARL+  +   G     +TSLT+P  YP+E +  +Y  RW IE G
Sbjct: 257 SPQARKLDTTLPEYWQARLIECEEGAGDYKGFITSLTEPESYPAEALRYVYQERWSIENG 316

Query: 315 YREMKQHLLESRFTLRSQLPELVFQELWGVLLAYNLIRYKMLLMAKSLPSVHPNQLSFRD 374
           Y E+KQ  L +   LRSQ    ++QE+WG+L AYNLIR +M  +A+    V P ++SF  
Sbjct: 317 YGELKQFQLSTATLLRSQKTSGIYQEIWGLLTAYNLIRVEMSQIARE-ARVPPLRISFVM 375

Query: 375 AASHIIFKLTQLSSQTPGNVPRDVLDIERNARQFKLDGKRERAYPRILKMSKNKFPVRSK 434
           A   I  +L   S   PG +P  +  +  N +QF L  KR+R   R +++SK  +PV SK
Sbjct: 376 AMRLIQDELIWCSLGKPGTIPTKLRKMRENVKQFILPEKRKRPKARAVRISKTHYPVHSK 435