Pairwise Alignments

Query, 440 a.a., ISSod7, transposase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 440 a.a., IS4 family transposase from Dickeya dadantii 3937

 Score =  444 bits (1142), Expect = e-129
 Identities = 229/440 (52%), Positives = 294/440 (66%), Gaps = 3/440 (0%)

Query: 1   MQLSEALARTHITRLTEFTCLADVLEPELIQSCLDSQGVATLRRRKLPMDAMIWAVIGMA 60
           M+LS+AL    +T       L+D++  ELI          TLR+RKLP+++MIW V+GM+
Sbjct: 1   MELSQALGIISVTSPEHACSLSDLIPIELIHQAFTLTDTVTLRKRKLPLESMIWLVVGMS 60

Query: 61  LFRGESVRSLINKLDIVLPQEIDYVARSAVTQARKRLGSEVVREVFSRSANTWHARAEHP 120
           +F    +  ++N +DI       + ARS+V Q RK LG + VRE+F  +   W+ +A HP
Sbjct: 61  IFCNRPMTEIVNLMDITDRTGAPFTARSSVIQRRKTLGEDAVRELFDITQRHWNQQAAHP 120

Query: 121 HWCGLNLYGVDGVVWRTPDSVQNQAAFGRTANASGEAAYPQIRMVCLMELSSHLLVNSAF 180
            W GLNL+ VDGVVWRT D+ +N  AF R A  +G   YPQ+RMVCLMELSSHL+  SAF
Sbjct: 121 KWHGLNLFAVDGVVWRTADTPENSTAFSRPAGRNGVGGYPQVRMVCLMELSSHLINASAF 180

Query: 181 DSVVENEMNLASQLISSIPNHSLTLFDRGFYSLGLLHAWQQAQPNSHWLLPLKKGTQYEV 240
           DS   +EM LA+QL    P++S+TLFD+GFYSLGLLH WQ A  N HWLLPLKK TQYEV
Sbjct: 181 DSENVSEMRLAAQLTEKTPDNSITLFDKGFYSLGLLHHWQTAGENRHWLLPLKKNTQYEV 240

Query: 241 VRTLGKHDQWVKLTTTPQARKKWPQLPDTLEARLLTKTVKGKSVAILTSLTDPMRYPSED 300
           +R LG+ D+ V L T+PQARK+WP+LP  + ARLLT+ V GK   +LTSLTDP RYP   
Sbjct: 241 IRRLGRGDEVVHLKTSPQARKQWPELPAEITARLLTRNVDGKERRVLTSLTDPNRYPGNS 300

Query: 301 IVDLYAHRWEIELGYREMKQHLLESRFTLRSQLPELVFQELWGVLLAYNLIRYKMLLMAK 360
           I +LY HRWEIELGYRE KQ +L+SR+TLRS+LPELV QELWGVLL YNL+RY+M+ MA 
Sbjct: 301 ISELYRHRWEIELGYREAKQEMLDSRWTLRSRLPELVRQELWGVLLTYNLVRYQMVKMAF 360

Query: 361 SLPSVH-PNQLSFRDAASHIIFKLTQLSSQTPGNVPRDVLDIERNARQFKLDGKRERAYP 419
            L   +   QLSF    S I   L  L   +PG +P ++  +   A+   L G+RER+YP
Sbjct: 361 ELKGDYLAYQLSFSGTISEITRLLITLPWASPGKMPGELRTLYEKAKWLVLPGRRERSYP 420

Query: 420 RILKMSKNKFPVRSKKNAVH 439
           R L++   K+P R  K A H
Sbjct: 421 RELRVKAQKYPER--KTAGH 438