Pairwise Alignments

Query, 440 a.a., ISSod7, transposase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 442 a.a., IS4 transposase from Escherichia coli BL21

 Score =  458 bits (1179), Expect = e-133
 Identities = 222/418 (53%), Positives = 293/418 (70%)

Query: 19  TCLADVLEPELIQSCLDSQGVATLRRRKLPMDAMIWAVIGMALFRGESVRSLINKLDIVL 78
           T L D L+PELI  CL   G  TLR+R+LP++ M+W ++GMAL R E +  ++N+LDI+L
Sbjct: 21  TSLGDYLDPELISRCLAESGTVTLRKRRLPLEMMVWCIVGMALERKEPLHQIVNRLDIML 80

Query: 79  PQEIDYVARSAVTQARKRLGSEVVREVFSRSANTWHARAEHPHWCGLNLYGVDGVVWRTP 138
           P    +VA SAV QAR+RLGSE VR VF+++A  WH    HPHWCGL L  +DGV WRTP
Sbjct: 81  PGNRPFVAPSAVIQARQRLGSEAVRRVFTKTAQLWHNATPHPHWCGLTLLAIDGVFWRTP 140

Query: 139 DSVQNQAAFGRTANASGEAAYPQIRMVCLMELSSHLLVNSAFDSVVENEMNLASQLISSI 198
           D+ +N AAF R  +A   A YPQ++MVC MEL+SHLL  +AF ++  +E  LA QLI   
Sbjct: 141 DTPENDAAFPRQTHAGNPALYPQVKMVCQMELTSHLLTAAAFGTMKNSENELAEQLIEQT 200

Query: 199 PNHSLTLFDRGFYSLGLLHAWQQAQPNSHWLLPLKKGTQYEVVRTLGKHDQWVKLTTTPQ 258
            +++LTL D+G+YSLGLL+AW  A  + HW++PL+KG QYE +R LGK D  VKL T+PQ
Sbjct: 201 GDNTLTLMDKGYYSLGLLNAWSLAGEHRHWMIPLRKGAQYEEIRKLGKGDHLVKLKTSPQ 260

Query: 259 ARKKWPQLPDTLEARLLTKTVKGKSVAILTSLTDPMRYPSEDIVDLYAHRWEIELGYREM 318
           ARKKWP L + + ARLLT T KGK   +LTS+TD MR+P  ++ DLY+HRWEIELGYRE+
Sbjct: 261 ARKKWPGLGNEVTARLLTVTRKGKVCHLLTSMTDAMRFPGGEMGDLYSHRWEIELGYREI 320

Query: 319 KQHLLESRFTLRSQLPELVFQELWGVLLAYNLIRYKMLLMAKSLPSVHPNQLSFRDAASH 378
           KQ +  SR TLRS+ PELV QELWGVLLAYNL+RY+M+ MA+ L    PNQLSF ++   
Sbjct: 321 KQTMQRSRLTLRSKKPELVEQELWGVLLAYNLVRYQMIKMAEHLKGYWPNQLSFSESCGM 380

Query: 379 IIFKLTQLSSQTPGNVPRDVLDIERNARQFKLDGKRERAYPRILKMSKNKFPVRSKKN 436
           ++  L  L   +PG +P  + D+    +  KL  +RERA+PR++K    K+P   KK+
Sbjct: 381 VMRMLMTLQGASPGRIPELMRDLASMGQLVKLPTRRERAFPRVVKERPWKYPTAPKKS 438