Pairwise Alignments

Query, 690 a.a., ATP-dependent helicase DinG (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 714 a.a., ATP-dependent helicase DinG/Rad3 from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  350 bits (897), Expect = e-100
 Identities = 241/701 (34%), Positives = 369/701 (52%), Gaps = 38/701 (5%)

Query: 6   VKNQIRAIYKDIAASLPNFRPRREQNFMVAEISKTLAGDYDKDRRIIVVEAGTGIGKSLS 65
           +K QI A YK +   +P+F PR  Q  M+A++++TLAG+   + R + +EA TG+GK+LS
Sbjct: 7   LKAQIAAWYKALQDQIPDFIPRAPQRQMIADVARTLAGE---EGRHLAIEAPTGVGKTLS 63

Query: 66  YILGTIPLALASKKKVCIATATVALQEQLLHKDLPFFLEQSGLNFRFGLVKGRQRYVCLS 125
           Y++  I +A   +K + ++TA VALQ+Q+  KDLP  L +   + RF    GR RYVC  
Sbjct: 64  YLIPGIAIAREEQKTLVVSTANVALQDQIFSKDLPL-LRKIIPDLRFTAAFGRGRYVCPR 122

Query: 126 KLAMLIGDDNSTQMAMW----QTKPDNSQIAM-LQTLLNDVNEGRWNGEIDTLSTPIPDH 180
            LA L   + + Q  +     +  P+N +       L  D++  +W+G  D     I D 
Sbjct: 123 NLAALASSEPTQQDLLAFLDDELTPNNQEEQKRCARLKGDLDGYKWDGLRDHTDIAIDDD 182

Query: 181 LWQQIACDKHSC-HRQLASHRNCPFHKAREDVDTWDVLIANHSLLFADLELGGGVILPNP 239
           LW++++ DK SC +R    +R CPF  AR ++   +V++ANH+L+ A +E     +LP P
Sbjct: 183 LWRRLSTDKASCLNRNCHYYRECPFFVARREIQEAEVVVANHALVMAAME--SEAVLPEP 240

Query: 240 EDVFYVIDEAHHLPIVARDFSSAQATLRGAADW----LEKVGKTSAKLQNQI--KSNNII 293
           + +  V+DE HHLP VARD     A +   A W    L+   K  A    Q   K+   +
Sbjct: 241 KHLLLVLDEGHHLPDVARDALEMSAEI--TASWYRLQLDLFSKLVATCMEQFRPKTTPPL 298

Query: 294 APAQAMQDH---IGDLIGQLNQVAHYCDTQTKQFANPESRYRFEHGKLPGALKIPAENLA 350
           A  + +  H   + +LI  LN + +         A  E+ +RF  G+LP  +    + LA
Sbjct: 299 ANPERLNAHCEEVYELIASLNAILNLYMP-----AAQEAEHRFAMGELPDEVMEICQRLA 353

Query: 351 ATSNLALKQFNKMQLLLAEAIKDGDIPKHQAEALQAEMGFMLQRLENLQKLWKMMAKEDS 410
             +             L+E     DI +     LQ  M   L   E   KLW++ +   S
Sbjct: 354 KLTETLRGLAESFLNDLSEKTGSHDIVRLHRVILQ--MNRALGMFEAQSKLWRLASMAQS 411

Query: 411 NKGAPMARWIEL-ITGKQVDYLFSASPIEVGFMLETMLWQKAAGVVLCSATLRALNNFDH 469
           + GAP+++W    I   Q+   F    I V   LE +LW+    +++ SATLR+LN+F  
Sbjct: 412 S-GAPVSKWATREIREGQLHVWFHCVGIRVSDQLERLLWRSVPHIIVTSATLRSLNSFSR 470

Query: 470 FAHQVGLSLKDGSRYLALQSPFDYPNNATLYLPKMKTEPT---DDAYTAELAEQILQLIE 526
                GL  K G R++AL SPF++     L +P+M+ EPT   ++ + AE+A    + +E
Sbjct: 471 LQEMSGLKEKAGDRFVALDSPFNHVEQGKLVIPQMRYEPTIDNEEQHIAEMAAYFREQLE 530

Query: 527 GEM--ATLVLFASYWQMEKVAELLEGKLALEILIQGNAPRQQLLETHKAKCDKGEPSILF 584
            +     LVLFAS   M++  E +   + L +L+QG+ PR +L+E H+ + + GE S+L 
Sbjct: 531 SKKHHGMLVLFASGRAMQRFLEHV-ADVRLLLLVQGDQPRYRLVELHRKRVESGERSVLV 589

Query: 585 GTGSFSEGLDLPGDYLTNLIVTKLPFAVPTSPVEQAHAEYVKIKGGNPFLQLTIPDASRK 644
           G  SF+EGLDL G+ LT + + K+ F    SPV     E++K     PF   ++P AS  
Sbjct: 590 GLQSFAEGLDLKGELLTQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFN 649

Query: 645 LIQSCGRLLRKEQDYGRVTILDRRLVTKRYGKSLLDALPPF 685
           LIQ  GRL+R     G V I D+RL+TK YG+ LL+ALP F
Sbjct: 650 LIQQVGRLIRSHACRGEVVIYDKRLLTKNYGQRLLNALPVF 690