Pairwise Alignments

Query, 292 a.a., ABC transporter, ATP-binding protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 294 a.a., lipoprotein from Pseudomonas simiae WCS417

 Score =  270 bits (689), Expect = 4e-77
 Identities = 143/283 (50%), Positives = 184/283 (65%), Gaps = 4/283 (1%)

Query: 2   LTITDLTKTYDNGVRALDGVNLTISKGMFGLLGPNGAGKSSLMRTIAALQSADSGSIVFD 61
           L +  L K Y+NGV AL GV+L++  GM+GLLGPNGAGKSSLMRT+A LQ  D+GSI  D
Sbjct: 7   LQVRGLRKRYNNGVEALRGVDLSVGPGMYGLLGPNGAGKSSLMRTLATLQQPDAGSIHLD 66

Query: 62  GIDVLADPQSLRKTLGYLPQDFNVYPRISAYDLLDHLAVLKGINQSKQRKEIVEGLLAHT 121
           G+DVL  P  LR+ LGYLPQ    YP +SA DLLD  A LKG   ++QR+E +E LL   
Sbjct: 67  GVDVLRGPDHLRRRLGYLPQQLGAYPGVSARDLLDRFAWLKGRTDNRQRREEIEALLHKV 126

Query: 122 NLYQHKSKAVSGFSGGMRQRFGIAQALLGDPKLLIVDEPTAGLDPEERNRFHNLLVSLGE 181
           NL Q   +A++ +SGGM +RFGIA AL+G P+LLIVDEPTAGLDP ERNRFH +L  +  
Sbjct: 127 NLQQAAHRALATYSGGMLRRFGIAMALVGSPRLLIVDEPTAGLDPAERNRFHRVLADVAA 186

Query: 182 EKVVILSTHIVEDVSELCANMAVLASGKILLQGNPQQLVSELTEKIWTKTVDQAEAQQLE 241
           E +V+LSTHIVEDV  LC+ +AVLA G+I+++G P  L++    ++W     + E   L 
Sbjct: 187 ESIVLLSTHIVEDVENLCSRLAVLAGGQIIVEGRPADLLAAEQGRLWEAPFSRGET--LP 244

Query: 242 NTLPVISKRLLAGRTVLNVMAETCPEGFTPAAAGLEDLYFSTL 284
             L V +     G  V+          FTP    LED+Y+  L
Sbjct: 245 AALHVAASP--EGSRVIVHGERPADSRFTPHVPRLEDIYYLAL 285