Pairwise Alignments

Query, 292 a.a., ABC transporter, ATP-binding protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 310 a.a., ABC transporter from Pseudomonas simiae WCS417

 Score =  149 bits (375), Expect = 1e-40
 Identities = 84/224 (37%), Positives = 135/224 (60%), Gaps = 3/224 (1%)

Query: 2   LTITDLTKTYDNGVRALDGVNLTISKG-MFGLLGPNGAGKSSLMRTIAALQSADSGSIVF 60
           L+I  LTKTY NG +AL G++L +++G  F LLGPNGAGKS+ +  ++ L +  SG++  
Sbjct: 5   LSIRQLTKTYGNGFQALSGIDLDVAEGDFFALLGPNGAGKSTTIGILSTLVNKTSGTVNI 64

Query: 61  DGIDVLADPQSLRKTLGYLPQDFNVYPRISAYDLLDHLAVLKGINQSKQRKEIVEGLLAH 120
            G D+   P +L++++G +PQ+FN       +D++   A   GI  +K  KE  E  L  
Sbjct: 65  FGHDLDKSPAALKRSIGVVPQEFNFNQFEKTFDIVVTQAGYYGI-PAKVAKERAEQYLTQ 123

Query: 121 TNLYQHKSKAVSGFSGGMRQRFGIAQALLGDPKLLIVDEPTAGLDPEERNRFHNLLVSLG 180
             L+  +       SGGM++R  IA+AL+ +P+LLI+DEPTAG+D E R      L  L 
Sbjct: 124 LGLWDKRDVPSRSLSGGMKRRLMIARALVHEPRLLILDEPTAGVDIELRRSMWTFLTELN 183

Query: 181 EEKV-VILSTHIVEDVSELCANMAVLASGKILLQGNPQQLVSEL 223
           E+ + +IL+TH +E+  +LC N+ ++  G I+   + + L+ +L
Sbjct: 184 EKGITIILTTHYLEEAEQLCRNIGIIDHGTIVENTSMRNLLGQL 227