Pairwise Alignments

Query, 614 a.a., AMP-binding protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 512 a.a., Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) from Variovorax sp. SCN45

 Score = 84.0 bits (206), Expect = 1e-20
 Identities = 130/540 (24%), Positives = 214/540 (39%), Gaps = 88/540 (16%)

Query: 29  KPKDANICRHLKLAAHHIPHHL-AVAVQQGKGKSFANLTYQELDFISLNKQSDAIAFALN 87
           K  +AN+   L+ A    P  L A+AV+   G     L Y   D   + + S  IA  L 
Sbjct: 3   KTDNANLFAALRAA---FPADLDAIAVETDSG-----LFYSWRD---VERASAMIANLLE 51

Query: 88  AYGLTRGMKAVLMVTPSLDFFALTFALFKAGIIPVLVDPGMGIKNLKQCFIEAAPDAFIG 147
           A GL +G +  + V  S++   L  A  +AG +            L   +  A  + FIG
Sbjct: 52  ALGLEKGARIAVQVEKSVEAMLLYLATLRAGYV---------FLPLNTAYQSAEIEYFIG 102

Query: 148 IPKAHIA---RRLLGW-----GKASVKRLINVDANQSGVTDTLSRLLTGAPSLASMLSFT 199
             +  +     R   W       A  K +  +D +++G                ++L   
Sbjct: 103 NAEPAVVVCTSRNASWVAPIATAAGTKHVFTLDDDRTG----------------TLLEVA 146

Query: 200 TKSSSAKLPEQVEYPMALLEHDEMAAILFTSGSTGTPKGVVYSHGMFEAQIQALKQDYGI 259
            + S    P       A  + D+MAAIL+TSG+TG  KG + SHG   +  + LK  +G 
Sbjct: 147 AQCSDRHTP-------ARRKADDMAAILYTSGTTGRSKGAMLSHGNLLSNAEVLKDYWGW 199

Query: 260 AHGERDLATFPLFSLFGPALGMTSIVPEMDASKPITANPEFLFAAIEKYQCSNIFVN-PA 318
             G+  +   P+F + G  + +   +  ++ SK +  +       ++K   + +F+  P 
Sbjct: 200 TEGDVLIHALPIFHVHGLFVALHGAL--LNGSKMLWFSKFDPKRIVQKLPEATVFMGVPT 257

Query: 319 LLERLGRAGEQTDSKNQHKLSSVKRVISAGAPATIASIARFSKMLSDGVPVLNSYGATES 378
           L  RL      T    +  + +++  I+  AP  I +   + +    G  +L  YG +E+
Sbjct: 258 LYVRLLAEPGLT----REAVRNMRLFIAGSAPLLIETFEEWRE--RTGHTILERYGMSET 311

Query: 379 LPISMIASDELFTTTQVTDNGGGICVGRAIDGVKIEIIAITEADIPEWDNRLCLNAGEIG 438
              +M+ S+  +   Q    GG   VG A+ GV++ +           D+       EIG
Sbjct: 312 ---AMLTSNP-YNPAQGERRGG--TVGFALPGVQLRV---------RDDSGRDCTTDEIG 356

Query: 439 EIVVTGQMVSQSYYHREKATAASKIWDSERQTFRHRMGDLGYLDDSGRLWMCGRKAHRVD 498
            I V+G  V   Y+   + T      D   +T     GD+G +D  G + + GR    + 
Sbjct: 357 NIEVSGPNVFSGYWRMPEKTKEEFTADGFFKT-----GDVGKIDGLGYITIVGRSKDLI- 410

Query: 499 ATQGGQFAKRYYSIPCERIFNTHPNVKRSALVGVTVK--GQHGVGEIKPLICIELDQSLV 556
              GG      Y    E   N    V  SA+VGV     G+ GV  + P     LD   +
Sbjct: 411 -ISGGY---NVYPAEIEGYINEMAGVAESAVVGVPHPDFGEVGVAIVIPKAGASLDADAI 466