Pairwise Alignments

Query, 614 a.a., AMP-binding protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 517 a.a., Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score = 73.9 bits (180), Expect = 2e-17
 Identities = 115/503 (22%), Positives = 196/503 (38%), Gaps = 87/503 (17%)

Query: 50  LAVAVQQGKGKSFANLTYQELDFISLNKQSDAIAFALNAYGLTRGMKAVLMVTPSLDFFA 109
           LA AVQ  +  +      ++  +  + ++    A AL A GL  G +  ++   S ++  
Sbjct: 7   LARAVQTRRQHTATIFAGRQRTWAQVGERVPRAAAALRALGLQPGDRLGILAMNSDNYIE 66

Query: 110 LTFALFKAGIIPVLVDPGMGI-KNL-----KQCFIEAAPDAFIGIPKAHIARRLLGWGKA 163
           + FA   A ++ V ++    + +N+      QC      DAF+      + + L G   A
Sbjct: 67  IFFAAAWANLVLVPLNTRWAVPENIYTLDDAQCQALIVDDAFV----PQVPQLLAGHAMA 122

Query: 164 SVKRLINVDANQSGVTDTL---SRLLTGAPSLASMLSFTTKSSSAKLPEQVEYPMALLEH 220
            V     + A +    + +     L+ G   +A                           
Sbjct: 123 HV-----IHAGEGATPEGMRGYEALIAGTAPMADECG---------------------RD 156

Query: 221 DEMAAILFTSGSTGTPKGVVYSHGMFEAQIQALKQDYGIAHGERD---LATFPLFSLFG- 276
           DE+  I +T G+TG PKGV+ SH  F   I A        H   D   + +  LF L G 
Sbjct: 157 DELCGIYYTGGTTGHPKGVMLSHKNF---ISASVNWIATLHFSEDTVYMHSAGLFHLAGC 213

Query: 277 -PALGMT------SIVPEMDASKPITANPEFLFAAIEKYQCSNIFVNPALLERLGRAGEQ 329
            PA+ +T        +P+ DA           F AI+ +Q +     P ++  +      
Sbjct: 214 SPAIALTLAGGTHVCLPKFDA--------VLAFEAIQTHQVNYCLFVPTMVNMM----IN 261

Query: 330 TDSKNQHKLSSVKRVISAGAPATIASIARFSKMLSDGVPVLNSYGATESLPISMIASDEL 389
             +  Q+ LSSV+      +P  +  +A   + L      +  YG TES  ++ ++    
Sbjct: 262 HPAFPQYDLSSVRYCEYGASPMPVPVLAAAMEKLPTW-EFIQGYGMTESAALT-VSLPWR 319

Query: 390 FTTTQVTDNGGGICVGRAIDGVKIEIIAITEADIPEWDNRLCLNAGEIGEIVVTGQMVSQ 449
           +   Q       +  GRA  GV + I+     ++P          G  GEI V G  V  
Sbjct: 320 YHFDQPDLPSKRLAAGRAAYGVDVRIVDEEGNEVPR---------GTHGEIAVRGAQVMI 370

Query: 450 SYYHREKATAASKIWDSERQTFRHRMGDLGYLDDSGRLWMCGRKAHRVDATQGGQFAKRY 509
            Y+ + +ATAA+      R  + H  GD  Y+D+ G +++  R    +    GG+     
Sbjct: 371 GYWRKPEATAAAL-----RNGWLH-TGDAAYMDEDGFVYIVDRVKDMI--ISGGE---NI 419

Query: 510 YSIPCERIFNTHPNVKRSALVGV 532
           YS   E   + HP V+  A++G+
Sbjct: 420 YSREVENAVHAHPAVRDCAVIGI 442