Pairwise Alignments

Query, 614 a.a., AMP-binding protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 545 a.a., Medium-chain-fatty-acid--CoA ligase (EC 6.2.1.-) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score = 75.1 bits (183), Expect = 7e-18
 Identities = 116/517 (22%), Positives = 197/517 (38%), Gaps = 101/517 (19%)

Query: 66  TYQELDFISLNKQSDAIAFALNAYGLTRGMKAVLMVTPSLDFFALTFALFKAGIIPVLVD 125
           T    D++ + +++  +A AL A G+  G +   +   S    AL + +  +G +   V+
Sbjct: 36  TVHRTDWLGVRQRARQVANALQALGVQPGERVGTLAWNSYRHLALYYGVSGSGAVLHTVN 95

Query: 126 PGMGIKNLKQCFIEAAPDAFI--GIPKAHIARRLLGWGKASVKRLINVDANQSGVTDTLS 183
           P +  + +    +  A D  +   I  A +  +L    K SVK  +        +TD   
Sbjct: 96  PRLFPEQIDY-IVNHAEDKVLCFDISFAPLVEQLAPRLK-SVKAFV-------AMTDRAH 146

Query: 184 RLLTGAPSLASMLSFTTKSSSAKLPEQVEYPMALLEHDEMAAILFTSGSTGTPKGVVYSH 243
                 P+L          SS       +Y    L+    +++ +TSG+TG PKGV+YSH
Sbjct: 147 MPAIQVPNLLCFDELLDAQSS-------DYTWPELDEKSASSLCYTSGTTGNPKGVLYSH 199

Query: 244 G--MFEAQIQALKQDYGIAHGERDLATFPLFS------------------LFGPALGMTS 283
              +    ++     +GI+  E  +   P+F                   L GP L   S
Sbjct: 200 RSTLLHTLMELAPDTFGISSAETLMLIVPMFHANAWGAPYAAAMVGARLVLPGPHLDGES 259

Query: 284 IVPEM-DASKPITANPEFLFAAIEKYQCSNIFVNPALLERLGRAGEQTDSKNQHKLSSVK 342
           +   M D     +     ++  + +Y   N  ++P  L                    VK
Sbjct: 260 VYTLMRDEKVTFSQGVPTVWMMLFQYLDKNPQIDPRQL-------------------GVK 300

Query: 343 RVISAGAPATIASIARFSKMLSDGVPVLNSYGATESLPISMI----------ASDELFTT 392
           R+   GA  + A + RF K    G  V+  +G TE+ PI +I          A DEL   
Sbjct: 301 RIGIGGAAVSRAVLERFEKQF--GAEVVQGWGMTETSPIGVISKLLPKHEGMAPDELVKV 358

Query: 393 TQVTDNGGGICVGRAIDGVKIEIIAITEADIPEWDNRLCLNAGEIGEIVVTGQMVSQSYY 452
                    +  GR + GV ++I+      +P WD          G ++V G  ++  YY
Sbjct: 359 K--------LKQGRGVWGVDLKIVDADGRALP-WDGVA------YGNLMVRGPWIASGYY 403

Query: 453 HREKATAASKIWDSERQTFRHRMGDLGYLDDSGRLWMCGRKAHRVDATQGGQFAKRYYSI 512
             E       + D E        GD+  +D  G L +  R    + +  GG++     SI
Sbjct: 404 RGE----GGSVLDEEGF---FPTGDVATIDADGYLQLVDRAKDVIKS--GGEWIS---SI 451

Query: 513 PCERIFNTHPNVKRSALVGVTVKGQHGVGEIKPLICI 549
             E    +HP V  +A++GV     H   + +PL+ +
Sbjct: 452 DVENAAASHPGVAEAAVIGVA----HPKWQERPLLLV 484