Pairwise Alignments

Query, 614 a.a., AMP-binding protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 562 a.a., Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score = 76.3 bits (186), Expect = 3e-18
 Identities = 116/534 (21%), Positives = 223/534 (41%), Gaps = 62/534 (11%)

Query: 37  RHLKLAAHHIPHHLAVAVQQGKGKSFANLTYQELDFISLNKQSDAIAFALNAY-GLTRGM 95
           R L L   ++ H+LAV+  +   K F       L +     +++ IA  L    G+  G 
Sbjct: 14  RQLTLPQTNLFHNLAVSAARFPDKPFIVFYDTPLSYAQCLNEAEHIAGHLQQVCGVRPGD 73

Query: 96  KAVLMVTPSLDFFALTFALFKAGIIPVLVDPGMGIKNLKQCFIEA-APDAFIGIPKAHIA 154
           + +L +  S  +    + + +A  + V V+P   ++ L+ C  ++ A  AF+        
Sbjct: 74  RVLLCMQNSPQWALAFYGILRANAVVVPVNPMNRVEELRHCLSDSGAQVAFVAQDLLPQL 133

Query: 155 RRLLGWGKASVKRLINVDANQSGVTDTLSRL--LTGAPSLA----SMLSFTTKSSSAKLP 208
           + LL      ++ L+    +      T  R+     AP L      +++++   ++A+ P
Sbjct: 134 QPLLTTEDEGLRHLVVATYSDHLRVPTELRVPDFVAAPRLPVAGPGLVAWSDVVAAARTP 193

Query: 209 EQVEYPMALLEHDEMAAILFTSGSTGTPKGVVYSHGMFEAQIQALKQDYGIAHGERDLAT 268
                 +     D++ A+ +TSG+TG PKG +++H    + +    + +G +     L+ 
Sbjct: 194 G-----LLTAGPDDLCAMPYTSGTTGLPKGCMHTHRSVMSTLVGGVRWFGTSQDAVCLSV 248

Query: 269 FPLF-------SLFGPALGMTSIVPEMDASKPITANPEFLFAAIEKYQCSN-IFVNPALL 320
            P F       SL GP     ++V      + + A        +++Y+ +    ++  ++
Sbjct: 249 LPFFHVTGLSGSLNGPLYAGATLVVLSRWDREVAA------ICMQRYRVTMWQAISTMVI 302

Query: 321 ERLGRAGEQTDSKNQHKLSSVKRVISAGAPATIASIARFSKMLSDGVPVLNSYGATESLP 380
           + L  A  Q D      L+S+  V   GA    A  AR   +   G   +  YG +E++ 
Sbjct: 303 DFL--AHPQLD---HFDLASLACVRGGGAAMPDAVAARLQAL--TGQHYIEGYGMSETMA 355

Query: 381 ISMIASDELFTTTQVTDNGGGICVGRAIDGVKIEII-AITEADIPEWDNRLCLNAGEIGE 439
            + I           T      C+G  +  V   ++   T A+ P          GE GE
Sbjct: 356 ATHI---------NPTHRPKPQCLGLPVFDVDARVLDPDTLAERP---------IGETGE 397

Query: 440 IVVTGQMVSQSYYHREKATAASKIWDSERQTFRHRMGDLGYLDDSGRLWMCGRKAHRVDA 499
           IVV G  + Q Y+   +AT+ + I D + + F  R GDLG++D+ G  +M  R    ++A
Sbjct: 398 IVVHGPQLMQGYWRNPQATSEAFI-DIDGKRFL-RTGDLGHVDEEGYFFMTDRLKRMINA 455

Query: 500 TQGGQFAKRYYSIPCERIFNTHPNVKRSALVGVTVKGQHGVGEIKPLICIELDQ 553
           +       + +    E +   HP ++ + ++G  V+       +K L+ +  DQ
Sbjct: 456 S-----GFKVWPAEVEALMYHHPAIQEACVIG--VRDARRGETVKALVVLRPDQ 502