Pairwise Alignments

Query, 614 a.a., AMP-binding protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 512 a.a., long-chain fatty acid--CoA ligase from Serratia liquefaciens MT49

 Score = 82.0 bits (201), Expect = 6e-20
 Identities = 127/516 (24%), Positives = 209/516 (40%), Gaps = 87/516 (16%)

Query: 34  NICRHLKLAAHHIPHHLAVAVQQGKGKSFANLTYQELDFISLNKQSDAIAFALNAYGLTR 93
           N+   L+ +A   P  LA+   + +      L+Y ELD ++     + +A  L   G+  
Sbjct: 3   NLSTLLEESARTFPDRLALVQDEFQ------LSYGELDQLA-----NQVAHLLRIRGVKP 51

Query: 94  GMKAVLMVTPSLDFFALTFALFKAGIIPVLVDPGMGIKNLKQCFIEAAPDAFIGIPKAHI 153
           G +  L      +F A+ F + KAG + V ++  +     +    ++   AF      H 
Sbjct: 52  GERVALACPNRWEFPAIYFGILKAGAVVVPLNILLKAGEFEYYLQDSQAVAFFCFEGGHG 111

Query: 154 ARRLLGWGKASVKRLINVDANQSG-----VTDTLSRLLTGAPSLASMLSFTTKSSSAKLP 208
               L  G+ +    I  DA QS      + D+L   L+G            + S A   
Sbjct: 112 ----LTLGEEAK---IAFDATQSCRDFIIIGDSLP--LSG-----------DRFSQAIRQ 151

Query: 209 EQVEYPMALLEHDEMAAILFTSGSTGTPKGVVYSHG--MFEAQIQALKQDYGIAHGERDL 266
           +  ++  A     + A IL+TSG+TG  KG   +H   +  A + A   +  +   +R L
Sbjct: 152 QPTDFDSASTLESDTAVILYTSGTTGRAKGAELTHSNLVLNALVSAQLFNSSVERPDRHL 211

Query: 267 ATFPLFSLFGP--------ALGMTSI-VPEMDASKPITANPEFLFAAIEKYQCSNIFVNP 317
            T PLF  FG         ALG T + +P  DA   I        + ++K+  +     P
Sbjct: 212 VTLPLFHTFGSTVQMNAGFALGATLVLMPRFDAKLAI--------SLMQKHAITFFAGVP 263

Query: 318 ALLERLGRAGEQTDSKNQHKL-SSVKRVISAGAPATIASIARFSKMLSDGVPVLNSYGAT 376
            +   L  A +  DS +   L  +++  +S GA   +  I  F++    GV +L  YG +
Sbjct: 264 TMYWALLNALD--DSVDLAMLRKNLRMAVSGGASLPVQIIEDFARRF--GVNILEGYGLS 319

Query: 377 ESLPISMIASDELFTTTQVTDNGGGICVGRAIDGVKIEIIAITEADIPEWDNRLCLNAGE 436
           E+ P++       F      +  G I  G+ I GV++ ++ +T   I E D        +
Sbjct: 320 ETSPVA------TFNHPGRVNKVGSI--GQPIWGVEVRLVDVTGKTITEID--------Q 363

Query: 437 IGEIVVTGQMVSQSYYHREKATAASKIWDSERQTFRHRMGDLGYLDDSGRLWMCGRKAHR 496
           +GE+ V G  V + Y +R +ATA         +    R GDL   D  G  ++  R    
Sbjct: 364 VGELAVRGHNVMKGYLNRPEATA------EVLENGWFRTGDLARRDADGVYFIVDRSK-- 415

Query: 497 VDATQGGQFAKRYYSIPCERIFNTHPNVKRSALVGV 532
            D    G F    Y    E +   HP V   A++GV
Sbjct: 416 -DVIIRGGF--NVYPREVEELMIRHPAVSLVAVIGV 448