Pairwise Alignments

Query, 614 a.a., AMP-binding protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 546 a.a., Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 76.3 bits (186), Expect = 3e-18
 Identities = 135/585 (23%), Positives = 236/585 (40%), Gaps = 101/585 (17%)

Query: 32  DANICRHLKLAAHHIPHHLAVAVQQGKGKSFANLTYQELDFISLNKQSDAIAFALNAYGL 91
           DA++  + +  A  +P  +AV    G     A+ TY  LD+ +       +A  L + G+
Sbjct: 23  DASLGDYWRQTARAVPDKIAVVDNHG-----ASWTYAALDYAA-----SRLANWLLSQGI 72

Query: 92  TRGMKAVLMVTPSLDFFALTFALFKAGIIPVLVDPG------MGIKNLKQCFIEAAPDAF 145
             G +    +    +F  +  A  K G + V + P       + + N  Q  I  AP  F
Sbjct: 73  QPGDRVAFQLPGWCEFTLIYLACLKTGAVSVPLLPAWREAELVWVLNKCQAKIFFAPTVF 132

Query: 146 -------IGIPKAHIARRLLGWGKASVKRLINVDANQSGVTD-TLSRLLTGAPSLASMLS 197
                  + +P  +  R L          ++ VD      T   LS+++  +  L S ++
Sbjct: 133 KQNRPVDLILPLQNQLRHLT--------HIVGVDKLAPATTALALSQIIDRSEPLQSDIN 184

Query: 198 FTTKSSSAKLPEQVEYPMALLEHDEMAAILFTSGSTGTPKGVVYSHGMFEAQIQALKQDY 257
                               +  DE+AA+LFTSG+ G PKGV+ +H    A  +A     
Sbjct: 185 --------------------IHGDELAAVLFTSGTEGMPKGVMLTHNNILASERAYCARL 224

Query: 258 GIAHGERDLATFPLFSLFGPALGMTSIVPEMDASKPITAN---PEFLFAAIEKYQCSNIF 314
            +   +  L   PL    G   G+T+  P +  ++ +  +   PE     + + +C+ + 
Sbjct: 225 NLTWQDVFLMPAPLGHATGFLHGVTA--PFLIGARSVLLDIFTPEACLTLLAQQRCTCMS 282

Query: 315 VNPALLERLGRAGEQTDSKNQHKLSSVKRVISAGAPATIASIARFSKMLSDGVPVLNSYG 374
                +  L  A EQ  +     LSS+ R    G       +AR  +    G+ +L+ YG
Sbjct: 283 GATPFIYDLLCAIEQQPA----DLSSL-RFFLCGGTTIPKKVARDCQ--QRGIKLLSIYG 335

Query: 375 ATESLPISMIASDELFTTTQVTDNGGGICVGRAIDGVKIEIIAITEADIPEWDNRLCLNA 434
           +TES P SM+   +  +    TD       G A  GV+I+I+          ++R  L A
Sbjct: 336 STESSPHSMVNLGDSTSRMMNTD-------GYAATGVEIKIVD---------EDRNTLPA 379

Query: 435 GEIGEIVVTGQMVSQSYYHREKATAASKIWDSERQTFRHRMGDLGYLDDSGRLWMCGRKA 494
           G  GE    G  V   Y    + TA  +  D+E   +    GDL  +D+ G + + GRK 
Sbjct: 380 GHEGEEASRGPNVFMGYLDEPELTA--RALDNEGWYY---SGDLCRMDEDGYIKITGRKK 434

Query: 495 HRVDATQGGQFAKRYYSIPCERIFNTHPNVKRSALVGVTVK--GQHGVGEI---KPLICI 549
             +   +GG+      S   E I   HP +  + +V +  +  G+     +    P + +
Sbjct: 435 DII--IRGGE---NISSREVEDILLQHPRIHDACVVAMPDERLGERSCAYVVLKPPHLSL 489

Query: 550 ELDQSLVCNKSAQL----YQELMVIAEQYSQTQG--IRRFLIHPD 588
            L++ +      ++    Y E +VI E+  +T    +++FL+  D
Sbjct: 490 TLEEVIAFFSRKRVAKYKYPERIVIVEKLPRTASGKVQKFLLRQD 534