Pairwise Alignments

Query, 217 a.a., DedA family protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 220 a.a., general envelope maintenance protein; DedA family inner membrane protein; putative multidrug efflux transporter from Escherichia coli BL21

 Score =  157 bits (397), Expect = 1e-43
 Identities = 82/215 (38%), Positives = 135/215 (62%), Gaps = 2/215 (0%)

Query: 1   MDQLYQLAQAMIHNDLAVLSNPNVTLMVSGVILCFLVMENGFIPTAFLPGDTLLILTGVL 60
           M+ L QL QA+   D   L+NP++  M+  V+   L +ENG +P AFLPGD+LL+L GVL
Sbjct: 1   MELLTQLLQALWAQDFETLANPSMIGMLYFVLFVILFLENGLLPAAFLPGDSLLVLVGVL 60

Query: 61  IYQDVL-HMGIVPLLMVATFIGTAIGYLQGYFLGHTQMYHRLLSHIDDKHQKKALYLIDK 119
           I +  + +   + LL VA  +G  + Y+QG +LG+T+     LSH+   + ++A +L  K
Sbjct: 61  IAKGAMGYPQTILLLTVAASLGCWVSYIQGRWLGNTRTVQNWLSHLPAHYHQRAHHLFHK 120

Query: 120 YGILTLLVARYIPFVRTIYPYIIGATGVSWSRFLVINFISSVMWITPLVGFGYVISHSKL 179
           +G+  LL+ R+I FVRT+ P I G +G++ +RF   N++S ++W+  L   GY++  + +
Sbjct: 121 HGLSALLIGRFIAFVRTLLPTIAGLSGLNNARFQFFNWMSGLLWVLILTTLGYMLGKTPV 180

Query: 180 ANEYQTQFMSIIVYLPIVLLVSGIV-TLIYKWLRK 213
             +Y+ Q MS ++ LP+VLLV G+  +L+  W +K
Sbjct: 181 FLKYEDQLMSCLMLLPVVLLVFGLAGSLVVLWKKK 215